Related genomes of genome NITMS based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

NITMS - Nitrosopumilus maritimus (strain SCM1)

Proteome version: 02-SEP-2008 (Rel. 95, Last updated, Version 3) with 1795 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	CENSY	Cenarchaeum symbiosum (strain A)	1010
2	NITGG	Nitrososphaera gargensis (strain Ga9.2)	917
3	SULIK	Sulfolobus islandicus (strain M.16.4 / Kamchatka #3)	417
4	SACS9	Saccharolobus solfataricus (strain 98/2)	415
5	SULIM	Sulfolobus islandicus (strain M.14.25 / Kamchatka #1)	415
6	SULIA	Sulfolobus islandicus (strain M.16.27)	413
7	SULIY	Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1)	412
8	SULIL	Sulfolobus islandicus (strain L.S.2.15 / Lassen #1)	411
9	SULIN	Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2)	411
10	NATSJ	Natrinema sp. (strain J7-2)	410

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	19
2	TRYCI	Trypanosoma congolense (strain IL3000)	21
3	UC087	Candidatus Pacebacteria bacterium LF-bin-483	27
4	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	27
5	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	27
6	MEGSC	Megaselia scalaris	28
7	MYCHA	Mycoplasma haemolamae (strain Purdue)	29
8	SULMC	Sulcia muelleri (strain CARI)	31
9	UC116	Patescibacteria group bacterium E44_bin74	31
10	MYCSL	Mycoplasma suis (strain Illinois)	31