Related genomes of genome NICAT based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

NICAT - Nicotiana attenuata

Proteome version: Ensembl Plants 38; NIATTr2 with 20969 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TOBAC	Nicotiana tabacum	13163
2	GOSHI	Gossypium hirsutum	9894
3	BRANA	Brassica napus	9119
4	WHEAT	Triticum aestivum	8642
5	SOLTU	Solanum tuberosum	8618
6	SOYBN	Glycine max	8533
7	SOLLC	Solanum lycopersicum	8153
8	ACTCC	Actinidia chinensis var. chinensis	8097
9	POPTR	Populus trichocarpa	7863
10	CAPAN	Capsicum annuum	7861

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ZINIC	Zinderia insecticola (strain CARI)	24
2	MYCCR	Mycoplasma conjunctivae (strain ATCC 25834 / HRC/581 / NCTC 10147)	26
3	UC116	Patescibacteria group bacterium E44_bin74	27
4	RALSL	Ralstonia solanacearum	28
5	MYCHA	Mycoplasma haemolamae (strain Purdue)	29
6	PHYMT	Phytoplasma mali (strain AT)	31
7	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	31
8	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	32
9	MYCS5	Mycoplasmopsis synoviae (strain 53)	32
10	PHYAS	Phytoplasma australiense	33