Related genomes of genome NAJNA based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

NAJNA - Naja naja

Proteome version: Ensembl 111; Nana_v5; GCA_009733165.1 with 18011 genes / 29965 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	PANGU	Pantherophis guttatus	11606
2	PSETE	Pseudonaja textilis	11588
3	CROTI	Crotalus tigris	11567
4	THAEL	Thamnophis elegans	11397
5	LACAG	Lacerta agilis	11189
6	PROMU	Protobothrops mucrosquamatus	11019
7	SALMN	Salvator merianae	10919
8	PODMU	Podarcis muralis	10620
9	VARKO	Varanus komodoensis	10577
10	SCEUN	Sceloporus undulatus	10476

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	21
2	ZINIC	Zinderia insecticola (strain CARI)	37
3	MYCHA	Mycoplasma haemolamae (strain Purdue)	40
4	UC116	Patescibacteria group bacterium E44_bin74	41
5	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	43
6	MYCS3	Mycoplasma suis (strain KI_3806)	45
7	UC087	Candidatus Pacebacteria bacterium LF-bin-483	47
8	MYCSL	Mycoplasma suis (strain Illinois)	49
9	UC105	Patescibacteria group bacterium Baikal-deep-G193	51
10	UC179	candidate division Kazan bacterium GW2011_GWA1_50_15 none	53