Related genomes of genome METPS based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

METPS - Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE)

Proteome version: 25-MAY-2010 (Rel. 121, Last updated, Version 4) with 2992 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	METAR	Methanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50)	1818
2	METCZ	Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254)	1749
3	METBF	Methanosarcina barkeri (strain Fusaro / DSM 804)	996
4	METMA	Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)	987
5	METAC	Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)	986
6	METMJ	Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1)	900
7	METHD	Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1)	885
8	METBM	Methanoculleus bourgensis (strain ATCC 43281 / DSM 3045 / OCM 15 / MS2)	881
9	METFS	Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP)	859
10	METPE	Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c)	856

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYCI	Trypanosoma congolense (strain IL3000)	19
2	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	24
3	RALSL	Ralstonia solanacearum	28
4	NANGC	Nannochloropsis gaditana (strain CCMP526)	33
5	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	33
6	ZINIC	Zinderia insecticola (strain CARI)	33
7	UC087	Candidatus Pacebacteria bacterium LF-bin-483	35
8	MYCHA	Mycoplasma haemolamae (strain Purdue)	36
9	MEGSC	Megaselia scalaris	37
10	MYCSL	Mycoplasma suis (strain Illinois)	37