Related genomes of genome LACDA based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

LACDA - Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081 / BCRC 10696 / JCM 1002 / NBRC 13953 / NCIMB 11778 / NCTC 12712 / WDCM 00102 / Lb 14)

Proteome version: 14-JUN-2006 (Rel. 88, Last updated, Version 3) with 2014 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	LACD2	Lactobacillus delbrueckii subsp. bulgaricus (strain 2038)	1450
2	LACDB	Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365 / Lb-18)	1395
3	LACDN	Lactobacillus delbrueckii subsp. bulgaricus (strain ND02)	1289
4	LACAL	Lactobacillus amylovorus (strain GRL 1118)	939
5	LACCS	Lactobacillus crispatus (strain ST1)	935
6	LACAR	Lactobacillus amylovorus (strain GRL 1112)	930
7	LACKZ	Lactobacillus kefiranofaciens (strain ZW3)	928
8	LACH4	Lactobacillus helveticus (strain DPC 4571)	917
9	LACAC	Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM)	910
10	LACJO	Lactobacillus johnsonii (strain CNCM I-12250 / La1 / NCC 533)	880

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYVY	Trypanosoma vivax (strain Y486)	3
2	EDHAE	Edhazardia aedis (strain USNM 41457)	13
3	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	14
4	ENTBH	Enterocytozoon bieneusi (strain H348)	15
5	TRYCI	Trypanosoma congolense (strain IL3000)	15
6	VITCO	Vittaforma corneae (strain ATCC 50505)	15
7	NEMP3	Nematocida parisii (strain ERTm3)	16
8	TRAHO	Trachipleistophora hominis	16
9	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	18
10	RALSL	Ralstonia solanacearum	19