Related genomes of genome LACAR based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

LACAR - Lactobacillus amylovorus (strain GRL 1112)

Proteome version: 19-JAN-2011 (Rel. 107, Last updated, Version 3) with 2020 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	LACAL	Lactobacillus amylovorus (strain GRL 1118)	1548
2	LACCS	Lactobacillus crispatus (strain ST1)	1288
3	LACAC	Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM)	1276
4	LACKZ	Lactobacillus kefiranofaciens (strain ZW3)	1235
5	LACJO	Lactobacillus johnsonii (strain CNCM I-12250 / La1 / NCC 533)	1107
6	LACH4	Lactobacillus helveticus (strain DPC 4571)	1100
7	LACGA	Lactobacillus gasseri (strain ATCC 33323 / DSM 20243 / BCRC 14619 / CIP 102991 / JCM 1131 / KCTC 3163 / NCIMB 11718 / NCTC 13722 / AM63)	1095
8	LACJF	Lactobacillus johnsonii (strain FI9785)	1063
9	LACDN	Lactobacillus delbrueckii subsp. bulgaricus (strain ND02)	1011
10	LACDB	Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365 / Lb-18)	931

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	EDHAE	Edhazardia aedis (strain USNM 41457)	12
2	VITCO	Vittaforma corneae (strain ATCC 50505)	12
3	ENTBH	Enterocytozoon bieneusi (strain H348)	12
4	TRYCI	Trypanosoma congolense (strain IL3000)	14
5	TRAHO	Trachipleistophora hominis	15
6	NEMP3	Nematocida parisii (strain ERTm3)	15
7	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	15
8	SPRLO	Spraguea lophii (strain 42_110)	19
9	NOSCE	Nosema ceranae (strain BRL01)	19
10	VAVCU	Vavraia culicis (isolate floridensis)	19