Related genomes of genome IXOSC based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

IXOSC - Ixodes scapularis

Proteome version: Ensembl Metazoa 58; ASM1692078v2 with 26659 genes / 34235 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	DERSI	Dermacentor silvarum	9839
2	DERAN	Dermacentor andersoni	9759
3	RHISA	Rhipicephalus sanguineus	9688
4	RHIMP	Rhipicephalus microplus	8625
5	IXOPE	Ixodes persulcatus	7558
6	ARGBR	Argiope bruennichi	5715
7	PARTP	Parasteatoda tepidariorum	5513
8	CENSC	Centruroides sculpturatus	5141
9	CYPCA	Cyprinus carpio carpio	5083
10	SALTR	Salmo trutta	4899

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	23
2	MYCHA	Mycoplasma haemolamae (strain Purdue)	37
3	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	37
4	UC116	Patescibacteria group bacterium E44_bin74	37
5	UC087	Candidatus Pacebacteria bacterium LF-bin-483	39
6	MYCS3	Mycoplasma suis (strain KI_3806)	40
7	ZINIC	Zinderia insecticola (strain CARI)	41
8	MYCSL	Mycoplasma suis (strain Illinois)	42
9	UC105	Patescibacteria group bacterium Baikal-deep-G193	44
10	MYCHN	Mycoplasma haemocanis (strain Illinois)	50