Related genomes of genome HELPB based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HELPB - Helicobacter pylori (strain B38)

Proteome version: 09-FEB-2010 (Rel. 117, Last updated, Version 6) with 1509 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	HELPH	Helicobacter pylori (strain HPAG1)	1290
2	HELP3	Helicobacter pylori (strain B8)	1283
3	HELP2	Helicobacter pylori (strain P12)	1274
4	HELPM	Helicobacter pylori (strain SJM180)	1270
5	HELPG	Helicobacter pylori (strain G27)	1269
6	HELP4	Helicobacter pylori (strain Gambia94/24)	1265
7	HELPP	Helicobacter pylori (strain PeCan4)	1264
8	HELPR	Helicobacter pylori (strain Lithuania75)	1263
9	HELPL	Helicobacter pylori (strain F32)	1261
10	HELPY	Helicobacter pylori (strain ATCC 700392 / 26695)	1259

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYVY	Trypanosoma vivax (strain Y486)	5
2	ENTBH	Enterocytozoon bieneusi (strain H348)	12
3	VITCO	Vittaforma corneae (strain ATCC 50505)	14
4	EDHAE	Edhazardia aedis (strain USNM 41457)	16
5	TRAHO	Trachipleistophora hominis	16
6	NEMP3	Nematocida parisii (strain ERTm3)	17
7	TRYCI	Trypanosoma congolense (strain IL3000)	18
8	VAVCU	Vavraia culicis (isolate floridensis)	20
9	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	20
10	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	22