Related genomes of genome FUSO4 based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

FUSO4 - Fusarium oxysporum f. sp. lycopersici (strain 4287 / CBS 123668 / FGSC 9935 / NRRL 34936)

Proteome version: Ensembl Fungi 16; FO2; 19-OCT-2012 with 16590 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	FUSC1	Fusarium oxysporum f. sp. cubense (strain race 1)	10405
2	GIBM7	Gibberella moniliformis (strain M3125 / FGSC 7600)	9330
3	FUSV7	Fusarium vanettenii (strain ATCC MYA-4622 / CBS 123669 / FGSC 9596 / NRRL 45880 / 77-13-4)	8207
4	NECHA	Nectria haematococca	8206
5	GIBZA	Gibberella zeae	8034
6	FUSPO	Fusarium poae	7999
7	FUSCU	Fusarium culmorum	7635
8	PESFW	Pestalotiopsis fici (strain W106-1 / CGMCC3.15140)	6167
9	COLGR	Colletotrichum graminicola	6053
10	COLGC	Colletotrichum gloeosporioides (strain Cg-14)	5945

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	UC116	Patescibacteria group bacterium E44_bin74	32
2	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	34
3	MYCHA	Mycoplasma haemolamae (strain Purdue)	37
4	MYCS3	Mycoplasma suis (strain KI_3806)	40
5	MYCSL	Mycoplasma suis (strain Illinois)	42
6	UC105	Patescibacteria group bacterium Baikal-deep-G193	43
7	UC179	candidate division Kazan bacterium GW2011_GWA1_50_15 none	43
8	ZINIC	Zinderia insecticola (strain CARI)	43
9	UC087	Candidatus Pacebacteria bacterium LF-bin-483	46
10	MYCHI	Mycoplasma haemofelis (strain Ohio2)	49