Related genomes of genome FRATH based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

FRATH - Francisella tularensis subsp. holarctica (strain LVS)

Proteome version: 02-MAR-2006 (Rel. 87, Last updated, Version 1) with 1869 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	FRATF	Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA)	1421
2	FRAT1	Francisella tularensis subsp. tularensis (strain FSC 198)	1413
3	FRATT	Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4)	1413
4	FRATO	Francisella tularensis subsp. holarctica (strain OSU18)	1396
5	FRATE	Francisella tularensis subsp. tularensis (strain NE061598)	1380
6	FRATW	Francisella tularensis subsp. tularensis (strain WY96-3418)	1343
7	FRATN	Francisella tularensis subsp. novicida (strain U112)	1336
8	FRACF	Francisella cf. novicida (strain Fx1)	1309
9	FRATM	Francisella tularensis subsp. mediasiatica (strain FSC147)	1253
10	FRAP2	Francisella philomiragia subsp. philomiragia (strain ATCC 25017 / FSC 153 / O#319-036)	1192

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	VITCO	Vittaforma corneae (strain ATCC 50505)	13
2	ENTBH	Enterocytozoon bieneusi (strain H348)	14
3	EDHAE	Edhazardia aedis (strain USNM 41457)	18
4	TRYCI	Trypanosoma congolense (strain IL3000)	19
5	TRAHO	Trachipleistophora hominis	22
6	NEMP3	Nematocida parisii (strain ERTm3)	22
7	NOSCE	Nosema ceranae (strain BRL01)	23
8	RALSL	Ralstonia solanacearum	25
9	SPRLO	Spraguea lophii (strain 42_110)	25
10	VAVCU	Vavraia culicis (isolate floridensis)	26