Related genomes of genome FRAAA based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

FRAAA - Frankia alni (strain ACN14a)

Proteome version: 06-FEB-2007 (Rel. 90, Last updated, Version 4) with 6723 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	FRASN	Frankia sp. (strain EAN1pec)	2768
2	FRAIE	Frankia inefficax (strain DSM 45817 / CECT 9037 / EuI1c)	2645
3	FRACC	Frankia casuarinae (strain DSM 45818 / CECT 9043 / CcI3)	2407
4	AMYMS	Amycolatopsis mediterranei (strain S699)	1824
5	AMYMU	Amycolatopsis mediterranei (strain U-32)	1786
6	STRBB	Streptomyces bingchenggensis (strain BCW-1)	1654
7	STRHJ	Streptomyces hygroscopicus subsp. jinggangensis (strain 5008)	1651
8	STRRD	Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100)	1623
9	STRLN	Streptomyces lincolnensis	1623
10	STRSW	Streptomyces scabiei (strain 87.22)	1600

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	VITCO	Vittaforma corneae (strain ATCC 50505)	19
2	TRYCI	Trypanosoma congolense (strain IL3000)	22
3	ENTBH	Enterocytozoon bieneusi (strain H348)	23
4	EDHAE	Edhazardia aedis (strain USNM 41457)	24
5	TRAHO	Trachipleistophora hominis	26
6	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	26
7	NEMP3	Nematocida parisii (strain ERTm3)	28
8	NANEQ	Nanoarchaeum equitans (strain Kin4-M)	29
9	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	29
10	VAVCU	Vavraia culicis (isolate floridensis)	31