Related genomes of genome FICAL based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

FICAL - Ficedula albicollis

Proteome version: Ensembl 73; FicAlb_1.4; 23-AUG-2013 with 15212 genes / 15383 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TYTAL	Tyto alba	11093
2	CHICK	Gallus gallus	10948
3	HALLE	Haliaeetus leucocephalus	10738
4	LACAG	Lacerta agilis	10486
5	PARMJ	Parus major	10464
6	HUMAN	Homo sapiens	10391
7	MOUSE	Mus musculus	10343
8	CORMO	Corvus moneduloides	10320
9	CHLGU	Chloebia gouldiae	10246
10	TAEGU	Taeniopygia guttata	10244

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	26
2	MYCHA	Mycoplasma haemolamae (strain Purdue)	33
3	UC116	Patescibacteria group bacterium E44_bin74	36
4	ZINIC	Zinderia insecticola (strain CARI)	36
5	UC087	Candidatus Pacebacteria bacterium LF-bin-483	36
6	UC105	Patescibacteria group bacterium Baikal-deep-G193	38
7	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	38
8	MYCS3	Mycoplasma suis (strain KI_3806)	40
9	MYCSL	Mycoplasma suis (strain Illinois)	43
10	MYCHI	Mycoplasma haemofelis (strain Ohio2)	45

FICAL - Ficedula albicollis

Based on number of: