Related genomes of genome FERBD based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

FERBD - Ferrimonas balearica (strain DSM 9799 / CCM 4581 / KCTC 23876 / PAT)

Proteome version: 08-MAR-2011 (Rel. 129, Last updated, Version 2) with 3781 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	SHEHH	Shewanella halifaxensis (strain HAW-EB4)	2241
2	SHEPA	Shewanella pealeana (strain ATCC 700345 / ANG-SQ1)	2232
3	SHESH	Shewanella sediminis (strain HAW-EB3)	2187
4	SHEPW	Shewanella piezotolerans (strain WP3 / JCM 13877)	2142
5	SHEWM	Shewanella woodyi (strain ATCC 51908 / MS32)	2114
6	SHELP	Shewanella loihica (strain ATCC BAA-1088 / PV-4)	2083
7	SHESA	Shewanella sp. (strain ANA-3)	2056
8	SHESM	Shewanella sp. (strain MR-4)	2051
9	SHEB9	Shewanella baltica (strain OS195)	2037
10	SHESR	Shewanella sp. (strain MR-7)	2037

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	VITCO	Vittaforma corneae (strain ATCC 50505)	21
2	EDHAE	Edhazardia aedis (strain USNM 41457)	25
3	ENTBH	Enterocytozoon bieneusi (strain H348)	26
4	TRAHO	Trachipleistophora hominis	30
5	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	33
6	NEMP3	Nematocida parisii (strain ERTm3)	34
7	NOSCE	Nosema ceranae (strain BRL01)	34
8	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	36
9	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	37
10	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	37