Related genomes of genome ERWAC based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

ERWAC - Erwinia amylovora (strain CFBP1430)

Proteome version: 01-APR-2010 (Rel. 104, Last updated, Version 2) with 3733 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ERWAE	Erwinia amylovora (strain ATCC 49946 / CCPPB 0273 / Ea273 / 27-3)	3178
2	ERWPE	Erwinia pyrifoliae (strain DSM 12162 / Ep1/96)	2730
3	ERWP6	Erwinia pyrifoliae (strain DSM 12163 / CIP 106111 / Ep16/96)	2709
4	ERWSE	Erwinia sp. (strain Ejp617)	2707
5	ERWT9	Erwinia tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 / NCPPB 4357 / Et1/99)	2594
6	ERWBE	Erwinia billingiae (strain Eb661)	2366
7	PANSA	Pantoea sp. (strain At-9b)	2317
8	PANAM	Pantoea ananatis (strain LMG 20103)	2279
9	PANVC	Pantoea vagans (strain C9-1)	2275
10	SERP5	Serratia proteamaculans (strain 568)	2181

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYVY	Trypanosoma vivax (strain Y486)	5
2	ENTBH	Enterocytozoon bieneusi (strain H348)	22
3	VITCO	Vittaforma corneae (strain ATCC 50505)	24
4	EDHAE	Edhazardia aedis (strain USNM 41457)	25
5	TRAHO	Trachipleistophora hominis	25
6	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	29
7	TRYCI	Trypanosoma congolense (strain IL3000)	29
8	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	31
9	NEMP3	Nematocida parisii (strain ERTm3)	32
10	VAVCU	Vavraia culicis (isolate floridensis)	34