Related genomes of genome CHAGB based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

CHAGB - Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970)

Proteome version: Ensembl Fungi 51; ASM14336v1 with 11048 proteins.

‹

Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	THETO	Thermothelomyces thermophilus	5033
2	MYCTT	Myceliophthora thermophila (strain ATCC 42464 / BCRC 31852 / DSM 1799)	5032
3	PESFW	Pestalotiopsis fici (strain W106-1 / CGMCC3.15140)	4480
4	FUSV7	Fusarium vanettenii (strain ATCC MYA-4622 / CBS 123669 / FGSC 9596 / NRRL 45880 / 77-13-4)	4453
5	NECHA	Nectria haematococca	4453
6	COLGR	Colletotrichum graminicola	4423
7	MAGO7	Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)	4353
8	COLSU	Colletotrichum sublineola	4338
9	FUSPO	Fusarium poae	4313
10	NEUT9	Neurospora tetrasperma (strain FGSC 2509 / P0656)	4224

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	26
2	UC116	Patescibacteria group bacterium E44_bin74	26
3	UC179	candidate division Kazan bacterium GW2011_GWA1_50_15 none	30
4	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	30
5	ZINIC	Zinderia insecticola (strain CARI)	31
6	MYCHA	Mycoplasma haemolamae (strain Purdue)	32
7	MYCS3	Mycoplasma suis (strain KI_3806)	35
8	MYCSL	Mycoplasma suis (strain Illinois)	36
9	UC105	Patescibacteria group bacterium Baikal-deep-G193	38
10	MYCCR	Mycoplasma conjunctivae (strain ATCC 25834 / HRC/581 / NCTC 10147)	38