Related genomes of genome BUCSC based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

BUCSC - Buchnera aphidicola subsp. Schlechtendalia chinensis

Proteome version: Ensembl Bacteria 37; ASM164811v1 with 499 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	BUCBP	Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)	408
2	YERPB	Yersinia pseudotuberculosis serotype IB (strain PB1/+)	404
3	SALPK	Salmonella paratyphi A (strain AKU_12601)	404
4	SALPA	Salmonella paratyphi A (strain ATCC 9150 / SARB42)	404
5	ECO81	Escherichia coli O81 (strain ED1a)	403
6	SERSA	Serratia plymuthica (strain AS9)	403
7	ECO27	Escherichia coli O127:H6 (strain E2348/69 / EPEC)	403
8	SHIFL	Shigella flexneri	403
9	SALT4	Salmonella typhimurium (strain 4/74)	403
10	SALTY	Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)	403

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYCI	Trypanosoma congolense (strain IL3000)	9
2	VITCO	Vittaforma corneae (strain ATCC 50505)	12
3	ENTBH	Enterocytozoon bieneusi (strain H348)	13
4	EDHAE	Edhazardia aedis (strain USNM 41457)	13
5	TRAHO	Trachipleistophora hominis	13
6	RALSL	Ralstonia solanacearum	13
7	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	16
8	GIAIC	Giardia intestinalis (strain ATCC 50803 / WB clone C6)	17
9	SYMMI	Symbiodinium microadriaticum	18
10	MEGSC	Megaselia scalaris	18