Related genomes of genome BLOPB based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

BLOPB - Blochmannia pennsylvanicus (strain BPEN)

Proteome version: 02-FEB-2014 (Rel. 119, Last updated, Version 5) with 610 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	KLEVT	Klebsiella variicola (strain At-22)	521
2	KLEP7	Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)	519
3	ENT38	Enterobacter sp. (strain 638)	517
4	ECO26	Escherichia coli O26:H11 (strain 11368 / EHEC)	516
5	KLEP3	Klebsiella pneumoniae (strain 342)	516
6	CITRI	Citrobacter rodentium (strain ICC168)	515
7	ECO10	Escherichia coli O103:H2 (strain 12009 / EHEC)	515
8	ENTCC	Enterobacter cloacae subsp. cloacae (strain ATCC 13047 / DSM 30054 / NBRC 13535 / NCTC 10005 / WDCM 00083 / NCDC 279-56)	515
9	ECO57	Escherichia coli O157:H7 str. EDL933	515
10	ENTAL	Enterobacter asburiae (strain LF7a)	515

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	5
2	TRAHO	Trachipleistophora hominis	10
3	TRYCI	Trypanosoma congolense (strain IL3000)	11
4	ENTBH	Enterocytozoon bieneusi (strain H348)	11
5	VITCO	Vittaforma corneae (strain ATCC 50505)	12
6	EDHAE	Edhazardia aedis (strain USNM 41457)	12
7	VAVCU	Vavraia culicis (isolate floridensis)	18
8	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	18
9	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	18
10	NEMP3	Nematocida parisii (strain ERTm3)	18