Related genomes of genome AVIPA based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

AVIPA - Avibacterium paragallinarum

Proteome version: Ensembl Bacteria 46; ASM96930v1 with 2266 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	GALAU	Gallibacterium anatis (strain UMN179)	1317
2	PASMH	Pasteurella multocida (strain HN06)	1295
3	PASMU	Pasteurella multocida (strain Pm70)	1277
4	MANSM	Mannheimia succiniciproducens (strain MBEL55E)	1252
5	ACTSZ	Actinobacillus succinogenes (strain ATCC 55618 / DSM 22257 / CCUG 43843 / 130Z)	1225
6	ACTP7	Actinobacillus pleuropneumoniae serotype 7 (strain AP76)	1223
7	ACTP2	Actinobacillus pleuropneumoniae serotype 5b (strain L20)	1209
8	ACTPJ	Actinobacillus pleuropneumoniae serotype 3 (strain JL03)	1204
9	AGGAN	Aggregatibacter aphrophilus (strain NJ8700)	1199
10	GLAP5	Glaesserella parasuis serovar 5 (strain SH0165)	1197

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	VITCO	Vittaforma corneae (strain ATCC 50505)	15
2	ENTBH	Enterocytozoon bieneusi (strain H348)	19
3	EDHAE	Edhazardia aedis (strain USNM 41457)	19
4	TRYCI	Trypanosoma congolense (strain IL3000)	20
5	TRAHO	Trachipleistophora hominis	21
6	NEMP3	Nematocida parisii (strain ERTm3)	24
7	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	24
8	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	24
9	NOSCE	Nosema ceranae (strain BRL01)	26
10	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	26