Related genomes of genome ASTEC based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

ASTEC - Asticcacaulis excentricus (strain ATCC 15261 / DSM 4724 / KCTC 12464 / NCIMB 9791 / VKM B-1370 / CB 48)

Proteome version: 16-MAY-2014 (Rel. 120, Last updated, Version 4) with 3743 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	CAUSK	Caulobacter sp. (strain K31)	1656
2	CAUVN	Caulobacter vibrioides (strain NA1000 / CB15N)	1596
3	CAUST	Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059)	1571
4	CAUVC	Caulobacter vibrioides (strain ATCC 19089 / CB15)	1552
5	BRESC	Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81)	1419
6	PHEZH	Phenylobacterium zucineum (strain HLK1)	1343
7	BRASB	Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)	1204
8	RHIL3	Rhizobium leguminosarum bv. viciae (strain 3841)	1198
9	MARMM	Maricaulis maris (strain MCS10)	1183
10	RHILS	Rhizobium leguminosarum bv. trifolii (strain WSM1325)	1183

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYVY	Trypanosoma vivax (strain Y486)	6
2	ENTBH	Enterocytozoon bieneusi (strain H348)	18
3	VITCO	Vittaforma corneae (strain ATCC 50505)	20
4	EDHAE	Edhazardia aedis (strain USNM 41457)	24
5	TRAHO	Trachipleistophora hominis	24
6	NEMP3	Nematocida parisii (strain ERTm3)	24
7	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	25
8	SPRLO	Spraguea lophii (strain 42_110)	29
9	NOSCE	Nosema ceranae (strain BRL01)	29
10	TRYCI	Trypanosoma congolense (strain IL3000)	30