Related genomes of genome ACEMN based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

ACEMN - Acetomicrobium mobile (strain ATCC BAA-54 / DSM 13181 / JCM 12221 / NGA)

Proteome version: 23-JUL-2013 (Rel. 117, Last updated, Version 3) with 2003 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	THELD	Thermovirga lienii (strain ATCC BAA-1197 / DSM 17291 / Cas60314)	1014
2	AMICL	Aminobacterium colombiense (strain DSM 12261 / ALA-1)	934
3	THEAS	Thermanaerovibrio acidaminovorans (strain ATCC 49978 / DSM 6589 / Su883)	873
4	THEFR	Thermanaerosceptrum fracticalcis	706
5	U04FI	Firmicutes bacterium Ch29	693
6	U02FI	Firmicutes bacterium AS04akNAM_72	686
7	UC182	Candidatus Vecturithrix granuli none	686
8	ALKMQ	Alkaliphilus metalliredigens (strain QYMF)	681
9	DESOD	Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 / VKM B-1628 / Singapore I)	681
10	HYDET	Hydrogenispora ethanolica	656

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYCI	Trypanosoma congolense (strain IL3000)	16
2	VITCO	Vittaforma corneae (strain ATCC 50505)	20
3	ENTBH	Enterocytozoon bieneusi (strain H348)	20
4	EDHAE	Edhazardia aedis (strain USNM 41457)	22
5	TRAHO	Trachipleistophora hominis	24
6	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	25
7	SPRLO	Spraguea lophii (strain 42_110)	27
8	NEMP3	Nematocida parisii (strain ERTm3)	28
9	MEGSC	Megaselia scalaris	29
10	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	30