Information of genome f__Mycoplasmoidaceae

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
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If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Ancestral genome of f__Mycoplasmoidaceae

with 17 descendant species and 980 (525 well supported) ancestral genes (HOGs).

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Common name:	f__Mycoplasmoidaceae
Taxonomic identifier:	-1175907006
Number of ancestral genes:	980 (all HOGs) 525 (well supported HOGs ?)
Number of ancestral genes included in ancestral contigs:	657
Number of descendant extant species:	17

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Code	Scientific Name	Common Name	Last Update	# of Sequences	Taxon Id	D.
MYCWM	Mycoplasma wenyonii (strain Massachusetts)		2017-Nov-07	652	-1036276249	B
MYCHA	Mycoplasma haemolamae (strain Purdue)		2019-Jan-06	925	-415554355	B
MYCS3	Mycoplasma suis (strain KI_3806)		2013-Dec-19	810	-2057700424	B
MYCSL	Mycoplasma suis (strain Illinois)		2013-Dec-17	844	-2001659479	B
MYCHN	Mycoplasma haemocanis (strain Illinois)		2013-Oct-03	1175	-1475004731	B
MYCHI	Mycoplasma haemofelis (strain Ohio2)		2013-Jan-10	1527	-2071660335	B
MYCHL	Mycoplasma haemofelis (strain Langford 1)		2011-Oct-02	1545	-1973551525	B
MYCPE	Mycoplasma penetrans (strain HF-2)		2010-Mar-22	1028	-618233113	B
UREPA	Ureaplasma parvum serovar 3 (strain ATCC 700970)		2010-Mar-21	611	-1102176463	B
UREP2	Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736)		2008-Jul-13	609	-825507213	B
UREU1	Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western)		2009-May-15	646	-947438243	B
MYCGH	Mycoplasma gallisepticum (strain R(high / passage 156))		2010-Jul-11	763	-1217090611	B
MYCGA	Mycoplasma gallisepticum (strain R(low / passage 15 / clone 2))		2007-Sep-26	726	-619307781	B
MYCGF	Mycoplasma gallisepticum (strain F)		2014-Jan-25	737	-216285651	B
MYCPN	Mycoplasma pneumoniae (strain ATCC 29342 / M129)		2009-Sep-16	686	-667820857	B
MYCPB	Mycoplasma pneumoniae (strain ATCC 15531 / DSM 22911 / NBRC 14401 / NCTC 10119 / FH)		2015-Mar-17	629	-7407403	B
MYCGE	Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195)		2007-Sep-26	483	-1583061476	B

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