Information of genome f__Chlorobiaceae

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Ancestral genome of f__Chlorobiaceae

with 10 descendant species and 4386 ancestral genes (HOGs).

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Common name:	f__Chlorobiaceae
Taxonomic identifier:	-1742580168
Number of ancestral genes:	4386
Number of descendant extant species:	10

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Code	Scientific Name	Common Name	Last Update	# of Sequences	Taxon Id	D.
PROA2	Prosthecochloris aestuarii (strain DSM 271 / SK 413)		2008-Oct-26	2319	-1634224483	B
CHLPB	Chlorobium phaeobacteroides (strain BS1)		2008-Sep-09	2434	-1580299840	B
CHLPD	Chlorobium phaeobacteroides (strain DSM 266)		2007-Mar-07	2579	-2025113313	B
CHLL2	Chlorobium limicola (strain DSM 245 / NBRC 103803 / 6330)		2008-Sep-09	2419	-1323680257	B
CHLL3	Chlorobium luteolum (strain DSM 273 / BCRC 81028 / 2530)		2014-Mar-24	2077	-907472204	B
CHLCH	Chlorobium chlorochromatii (strain CaD3)		2014-Mar-24	1991	-875128499	B
PELPB	Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1)		2009-Jan-19	2685	-125904839	B
CHLPM	Chlorobium phaeovibrioides (strain DSM 265 / 1930)		2008-Apr-09	1750	-14276987	B
CHLTE	Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS)		2009-Sep-16	2251	-1196876461	B
CHLP8	Chlorobaculum parvum (strain DSM 263 / NCIMB 8327)		2008-Oct-26	2044	-1024294342	B

Showing 1 to 10 of 10 rows