Information of genome asterids

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Ancestral genome of asterids

with 11 descendant species and 54852 ancestral genes (HOGs).

‹

Common name:	asterids
NCBI taxonomic identifier:	71274
Number of ancestral genes:	54852
Number of descendant extant species:	11

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Code	Scientific Name	Common Name	Last Update	# of Sequences	Taxon Id	D.
HELAN	Helianthus annuus	Common sunflower	2018-Jul-08	52191	4232	E
CYNCS	Cynara cardunculus var. scolymus	Globe artichoke	2019-Nov-20	26505	59895	E
DAUCS	Daucus carota subsp. sativus	Carrot	2019-Aug-13	32109	79200	E
TOBAC	Nicotiana tabacum	Common tobacco	2019-Jun-26	74056	4097	E
NICAT	Nicotiana attenuata	Coyote tobacco	2018-Mar-03	20969	49451	E
CAPAN	Capsicum annuum	Capsicum pepper	2019-Nov-20	35845	4072	E
SOLLC	Solanum lycopersicum	Tomato	2021-Jan-24	34429	4081	E
SOLTU	Solanum tuberosum	Potato	2013-Dec-19	41796	4113	E
ERYGU	Erythranthe guttata	Yellow monkey flower	2022-Jun-09	31861	4155	E
COFCA	Coffea canephora	Robusta coffee	2019-Nov-20	25574	49390	E
ACTCC	Actinidia chinensis var. chinensis	Chinese soft-hair kiwi	2019-Nov-20	33115	1590841	E

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