Information of genome Atherinomorphae

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Ancestral genome of Atherinomorphae

with 10 descendant species and 36250 ancestral genes (HOGs).

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Common name:	Atherinomorphae
NCBI taxonomic identifier:	1489913
Number of ancestral genes:	36250
Number of descendant extant species:	10

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Code	Scientific Name	Common Name	Last Update	# of Sequences	Taxon Id	D.
ORYLA	Oryzias latipes	Medaka fish	2013-Mar-07	20499	8090	E
ORYME	Oryzias melastigma	Marine medaka	2019-Feb-26	36345	30732	E
ORYJA	Oryzias javanicus	Javanese ricefish	2021-Jul-01	50290	123683	E
CYPVA	Cyprinodon variegatus	Sheepshead minnow	2019-Mar-24	32184	28743	E
POERE	Poecilia reticulata	Guppy	2021-Jan-16	34347	8081	E
POEFO	Poecilia formosa	Amazon molly	2014-Oct-01	25163	48698	E
XIPMA	Xiphophorus maculatus	Southern platyfish	2022-Jun-19	36613	8083	E
GAMAF	Gambusia affinis	Western mosquitofish	2021-May-28	32756	33528	E
KRYMA	Kryptolebias marmoratus	Mangrove killifish	2020-Jan-19	30189	37003	E
NOTFU	Nothobranchius furzeri	Turquoise killifish	2018-Feb-06	33407	105023	E

Showing 1 to 10 of 10 rows