Information of genome Agaricales

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Ancestral genome of Agaricales

with 11 descendant species and 19723 ancestral genes (HOGs).

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Common name:	Agaricales
NCBI taxonomic identifier:	5338
Number of ancestral genes:	19723
Number of descendant extant species:	11

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Code	Scientific Name	Common Name	Last Update	# of Sequences	Taxon Id	D.
SCHCM	Schizophyllum commune (strain H4-8 / FGSC 9210)	Split gill fungus	2020-Nov-16	13194	578458	E
SCHCO	Schizophyllum commune	Split gill fungus	2012-Dec-04	13112	5334	E
AGABI	Agaricus bisporus var. bisporus	Common mushroom	2010-Sep-29	10366	192523	E
AGABU	Agaricus bisporus var. burnettii (strain JB137-S8 / ATCC MYA-4627 / FGSC 10392)	White button mushroom	2020-Nov-16	11278	597362	E
COPC7	Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)	Inky cap fungus	2019-Jan-22	13356	240176	E
COPCI	Coprinopsis cinerea	Inky cap fungus	2012-Dec-04	18921	5346	E
LACBI	Laccaria bicolor		2008-Jun-11	20052	29883	E
ARMGA	Armillaria gallica	Bulbous honey fungus	2020-Nov-16	25695	47427	E
ARMOS	Armillaria ostoyae	Armillaria root rot fungus	2021-Sep-28	22299	47428	E
MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	Witches'-broom disease fungus	2019-Mar-24	13559	554373	E
HYPSF	Hypholoma sublateritium (strain FD-334 SS-4)		2020-Nov-16	17771	945553	E

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