version information
domain
The current version defines (Protein U Gene) as domain of this property instead of only Gene (it is the case of mbgd:domain).
This property is different to CDAO has_Parent because a Taxon is not a Node.
has
belongs_to
part_of
contained in
in taxon
member of
Inverse property of inDataset. It permits to navigate to the clusters included in a particular dataset.
Has cluster
Property that permits to define the membership of a cluster of homologs or a sequence unit to a clusters of homologs
Has homologous
It permits to link a cluster with its data source
Has source
Property that associates a cluster of homologs with the taxonomic range at which it has been calculated
Has taxonomic range
Inverse of has homologous. This property permits to find the cluster in which a cluster or sequence unit is included.
Is homologous member
Property that provides the dataset associated with a gene tree node
In dataset
has part
has ordered part
encodes
SIO_010079
A relation between two objects, in which the first object is produced from the information contained in the second object.
is encoded by
description
domainEnd
This new version (oma:endLocation) of mbgd:domainEnd eliminates the following assertions: rdfs:subPropertyOf :domainPosition and rdfs:subPropertyOf sio:SIO_000792. Because it leads to inconsistencies since sio:SIO_000792 is a class (it is not a property).
domainBegin
This new version (oma:startLocation) of mbgd:domainBegin eliminates the following assertions: rdfs:subPropertyOf :domainPosition and rdfs:subPropertyOf sio:SIO_000791. Because it leads to inconsistencies since sio:SIO_000791 is a class (it is not a property).
UniProtKB/TrEMBL identifier
UniProt Identifier
Identifier is a general purpose property to assert an identifier from an unknown source to an instance. If the identifier source is known (e.g. UniProt TrEMBL) then prefer to assert always as possible a specific sub-propety of identifier (e.g. uniProtId) instead of the general purpose property.
identifier
Property that stores the name of the taxonomic range at which a given cluster of homologs has been calculated
tax range
This property links a cluster of homologs with its taxonomic range.
tax range id
version
scientific name
Taxon
Domain
Species
EXP
IBA
IBD
IC
IDA
IEA
IEP
IGC
IGI
IKR
IMP
IPI
IRD
ISA
ISM
ISO
ISS
NAS
ND
RCA
TAS
Tree with a root node, which is the common ancestor to all the nodes in the tree
RootedTree
Evolutionary event
cladogeneticChange
Evolutionary event that consists on the duplication of a gene
geneDuplication
Evolutionary event related with the evolution of a gene in different species
speciation
TU
Basic unit of graphs and trees
Node
biological_region
A node of a tree whose leaf nodes are sequence units and whose internal nodes are clusters of homologs
Gene tree node
A tree whose content is the result of the application of hierarchical clustering to a dataset
Hierarchical clustering tree
A tree whose leaf nodes correspond to genes
Hierarchical gene tree
Set of homologous sequences
Cluster of homologs
Set of homologous sequences derived from a speciation event.
Cluster of orthologs
A resource that provides information about orthology
Orthology dataset
Set of homologous sequences derived from a duplication event
Cluster of paralogs
protein or DNA sequence as a unit of comparison
Sequence unit
A region of the sequence of the gene
Subgene
The taxonomic range represents the taxon at which a group of sequences are considered members of the same cluster of orthologs/paralogs
Taxonomic range
An element of a taxonomy for classifying life forms.
Collection of data
Dataset
database