Entry CAVPO16029 (ENSCPOG00000023076)

E Cavia porcellus


General Information

Description
protocadherin alpha subfamily C, 1 [Source:HGNC Symbol;Acc:8676]
Organism
CAVPO - Cavia porcellus (Taxon-ID: 10141)
Locus
scaffold_6join(3272806..3275238, 3334544..3334602, 3336833..3336921, 3359032..3359237, 3359863..3359961)
Number of exons
5

IDs and Cross-references

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Domain Architecture

Gene Ontology

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Protein Sequence

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MVGWRAAVLC LWVSCGAAAV LLEYSVSEET ERGVAVANVA ADLKLPAAAL SLRNFRVLSS    60
YREPYFQVDP SSGSLVVREP ADRELLCGTK AACALTYELI LEDPLELHKM HVHVLDTNDN   120
SPLFPAGDVQ LLIPEFLSPG ARFTLPNAQD ADEGSNGVLS YSLSPSQHFR LEMGSRVDGS   180
AYPELVLEKA LDREQRATHL LVLTALDSGL PALSGEAQVT IVVVDTNDNA PVFERSVYCT   240
KVPETAPSGT VLFQVQASDP DEGSNGEVWY SLSNSTRAEL RHLFHVHPKS GEVRVAASLG   300
APEVLLEAYI EARDEGAFGL SSTAKLLVEV TDVNDHAPEV DFMTLSGPVP EDAVPGTVIA   360
LLSVKDEDRG PNGRVICSMS SRGPFQLKAF FDNYYSLLTD GPLDREQMNE YQVLITASDS   420
GSPPLSTQRT FTVSVADVND NTPRFPQPQQ ELFVAENNGP GDSLGHVFAQ DLDLGENGLV   480
FYKLLDIISE GIPATSLVAV ESSSGAIIAK TSFDFEQLRR LSFQVEGRDG GIPARSATVT   540
VNLFVVDRND NAPVILFPLP RNGSIPVEIV PRSARTGHLI TKVVAEDADS GSNAWLTYRI   600
SQASDSSLFR ISANMGELRT ARLVLPTDAV KQRVMVVVRD HGDPPLSSSV VLGVLLSNFT   660
PQILPAFEDV WEPGGQLTAQ NLYLAIALAC ISFLFLGCLI FFICIKLNQT PVSCSRSCCH   720
TPEDLRHRRQ VASNPCVKSA TVDITTVERL SQTYFYRASL GLGSDSNSLL LCGEYNAADL   780
RNLATGVGLN LPISCIQIWN RKGDLANVNA MPRQPNPDWR YSASLRAGMH SSVHLEEAGI   840
LRAGPGGPDQ QWPTVSSATP EPEAGEVSPP VGAGVNSNSW TFKYGPGNPK QSGPGELPDK   900
FIIPGSPAII SIRQEPANSQ IDKSDFITFE GKCETKETRL SKFYNSRSGG HPRANKTTLS   960
DK                                                                  962

Coding Sequence

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ATGGTGGGCT GGAGGGCGGC GGTTCTGTGT TTGTGGGTCT CCTGCGGCGC TGCCGCGGTG    60
CTGCTGGAGT ACTCGGTGTC GGAGGAGACC GAGCGGGGCG TAGCGGTAGC TAACGTCGCC   120
GCAGACTTGA AGCTACCAGC GGCTGCTCTG TCCTTGAGAA ACTTTCGCGT CCTTTCCAGC   180
TACCGCGAGC CTTACTTCCA AGTGGACCCA AGCAGCGGTA GCTTGGTGGT CCGAGAGCCG   240
GCGGATCGCG AGCTGCTGTG CGGGACCAAA GCTGCCTGCG CCTTGACCTA CGAGCTAATA   300
CTCGAGGACC CCCTGGAGCT GCACAAGATG CACGTCCACG TCCTGGACAC CAACGACAAC   360
TCACCTCTCT TCCCTGCCGG CGACGTGCAG CTGCTCATCC CGGAGTTCCT GTCTCCCGGA   420
GCCCGCTTTA CTCTCCCGAA TGCCCAAGAT GCAGACGAGG GAAGCAACGG GGTGCTTAGC   480
TACAGCCTAA GCCCCAGCCA GCACTTTCGC CTGGAGATGG GATCGCGGGT CGACGGCAGC   540
GCGTATCCAG AGTTGGTGCT GGAGAAAGCG CTGGACCGTG AGCAGCGTGC CACACATCTG   600
CTGGTACTCA CAGCTCTAGA CAGCGGGCTG CCTGCGCTCT CTGGAGAAGC ACAAGTCACC   660
ATCGTTGTGG TGGACACAAA TGACAACGCG CCCGTGTTTG AACGCTCTGT GTACTGCACC   720
AAAGTTCCAG AGACTGCTCC CAGTGGGACC GTGTTATTCC AAGTTCAGGC CTCGGATCCG   780
GATGAAGGGT CCAATGGTGA AGTCTGGTAC TCCTTAAGCA ATAGCACGAG AGCAGAGCTG   840
AGACATCTCT TTCACGTGCA CCCTAAAAGT GGAGAGGTCC GGGTAGCTGC TTCCCTCGGT   900
GCACCTGAAG TGCTGTTGGA GGCATACATT GAGGCGAGGG ACGAAGGAGC CTTTGGTTTA   960
TCGAGCACTG CCAAACTGCT GGTGGAAGTG ACTGACGTGA ACGATCATGC CCCGGAGGTG  1020
GATTTCATGA CTCTCTCCGG CCCGGTGCCT GAAGACGCTG TCCCTGGCAC CGTGATTGCT  1080
CTACTTAGTG TAAAGGATGA GGACCGTGGT CCCAATGGTA GAGTCATTTG CAGTATGTCC  1140
AGCAGAGGCC CTTTTCAGCT GAAAGCTTTT TTTGACAATT ACTATAGCTT ACTGACAGAT  1200
GGGCCTCTGG ACCGGGAGCA GATGAATGAA TACCAAGTCC TAATTACTGC CTCAGATAGT  1260
GGCTCACCCC CACTCAGCAC CCAAAGGACA TTCACTGTGT CAGTTGCTGA CGTGAATGAC  1320
AATACACCAA GATTTCCTCA ACCTCAACAG GAACTTTTTG TGGCTGAAAA CAATGGCCCT  1380
GGGGACTCTC TAGGCCATGT GTTTGCCCAG GACCTGGACT TGGGGGAGAA TGGCCTTGTT  1440
TTTTATAAGC TGTTGGATAT TATCTCTGAA GGGATCCCAG CCACTAGTTT GGTGGCAGTG  1500
GAATCATCCA GTGGTGCTAT CATTGCCAAA ACTTCCTTTG ACTTTGAGCA ACTCAGGAGA  1560
CTTAGTTTCC AAGTGGAAGG CAGGGATGGT GGCATTCCTG CCAGAAGTGC AACAGTGACT  1620
GTGAACTTGT TTGTGGTAGA CAGGAATGAC AATGCTCCAG TTATCTTGTT TCCTCTGCCC  1680
AGAAATGGCT CAATCCCTGT AGAAATTGTG CCTCGCTCTG CCAGAACTGG ACACTTGATC  1740
ACAAAAGTGG TAGCAGAGGA CGCAGATAGT GGTTCCAATG CCTGGCTCAC TTACCGCATC  1800
TCTCAGGCTT CTGACTCTAG CCTTTTCAGA ATTTCAGCCA ATATGGGAGA GCTCCGTACT  1860
GCACGCCTGG TTCTTCCCAC TGATGCAGTT AAGCAGAGGG TGATGGTAGT GGTTCGGGAC  1920
CACGGAGACC CACCACTTTC CTCTTCTGTT GTTCTTGGTG TGCTGTTGAG TAATTTTACA  1980
CCACAGATCC TTCCAGCCTT TGAAGATGTC TGGGAACCAG GAGGGCAGCT TACTGCCCAG  2040
AACTTGTATT TAGCAATTGC CCTGGCCTGC ATTTCCTTTT TATTTCTGGG GTGTTTAATT  2100
TTCTTCATAT GCATCAAGTT GAACCAGACC CCAGTTTCCT GCTCTAGGAG TTGCTGTCAC  2160
ACTCCAGAGG ATCTAAGGCA TAGAAGGCAG GTAGCTTCTA ATCCTTGCGT GAAATCAGCC  2220
ACAGTAGATA TCACCACAGT TGAGAGACTT TCTCAGACAT ATTTCTATCG AGCCTCTCTG  2280
GGACTTGGCT CTGATAGTAA CAGTTTGCTG TTGTGTGGGG AATACAATGC TGCTGACCTA  2340
AGAAATCTGG CCACTGGTGT AGGACTGAAT TTGCCAATTT CCTGTATTCA GATTTGGAAT  2400
AGGAAAGGGG ATCTTGCAAA TGTCAATGCC ATGCCGCGAC AACCCAACCC TGACTGGCGT  2460
TACTCTGCCT CCCTGAGAGC AGGCATGCAC AGTTCTGTGC ACCTGGAGGA GGCTGGCATC  2520
CTACGGGCCG GTCCGGGAGG GCCTGATCAG CAGTGGCCAA CTGTATCCAG TGCAACACCA  2580
GAACCAGAGG CAGGAGAGGT GTCCCCTCCA GTAGGTGCTG GTGTCAACAG CAACAGCTGG  2640
ACCTTTAAGT ACGGACCAGG CAACCCCAAA CAATCCGGTC CCGGTGAGTT GCCAGACAAA  2700
TTCATTATCC CAGGATCTCC TGCAATCATC TCCATCCGGC AGGAACCTGC TAACAGCCAA  2760
ATTGACAAAA GTGACTTCAT AACCTTCGAG GGGAAATGTG AGACTAAAGA GACCAGACTT  2820
TCTAAATTTT ACAATTCAAG AAGTGGTGGC CACCCTCGAG CAAATAAAAC TACCCTTTCT  2880
GACAAGXXX                                                          2889