<?xml version='1.0' encoding='UTF-8'?> <orthoXML xmlns="http://orthoXML.org/2011/" origin="OMA" originVersion="Jun 2024" version="0.5"> <species name="Macadamia integrifolia" NCBITaxId="60698" taxonId="456"> <database name="Macadamia integrifolia from Refseq" version="Refseq; SCU_Mint_v3; GCF_013358625.1; 22-JUL-2021; Macadamia integrifolia Annotation Release 100"> <genes> <gene id="22709067" protId="MACIN02346"/> </genes> </database> </species> <species name="Arabis alpina" NCBITaxId="50452" taxonId="540"> <database name="Arabis alpina from ENA" version="ENA; A_alpina_V4; GCA_000733195.1"> <genes> <gene id="24006862" protId="ARAAL22103"/> </genes> </database> </species> <species name="Cucumis sativus" NCBITaxId="3659" taxonId="551"> <database name="Cucumis sativus from Ensembl Plants 38" version="Ensembl Plants 38; ASM407v2"> <genes> <gene id="23398102" protId="CUCSA21178"/> </genes> </database> </species> <species name="Lotus japonicus" NCBITaxId="34305" taxonId="567"> <database name="Lotus japonicus from modENCODE" version=""> <genes> <gene id="23472728" protId="LOTJA29068"/> </genes> </database> </species> <species name="Actinidia chinensis var. chinensis" NCBITaxId="1590841" taxonId="511"> <database name="Actinidia chinensis var. chinensis from Ensembl Plants 45" version="Ensembl Plants 45; Red5_PS1_1.69.0"> <genes> <gene id="22973775" protId="ACTCC05301"/> </genes> </database> </species> <species name="Aegilops tauschii subsp. strangulata" NCBITaxId="200361" taxonId="483"> <database name="Aegilops tauschii subsp. strangulata from Refseq" version="Refseq; Aet v5.0; GCF_002575655.2; 02-DEC-2021"> <genes> <gene id="21724158" protId="AEGTS43109"/> </genes> </database> </species> <species name="Klebsormidium nitens" NCBITaxId="105231" taxonId="431"> <database name="Klebsormidium nitens from Genbank" version="Genbank; ASM70883v1; GCA_000708835.1; 27-MAY-2017"> <genes> <gene id="20646757" protId="KLENI13082"/> </genes> </database> </species> <species name="Physcomitrium patens" NCBITaxId="3218" taxonId="434"> <database name="Physcomitrella patens from ENSEMBL plants v21" version="Ensembl Plants 21; ASM242v1; 4-DEC-2013"> <genes> <gene id="20696548" protId="PHYPA10926"/> </genes> </database> </species> <species name="Stylonychia lemnae" NCBITaxId="5949" taxonId="352"> <database name="Stylonychia lemnae from Ensembl Protists 39" version="Ensembl Protists 39; Stylonychia_lemnae_asm_v1.0"> <genes> <gene id="19968294" protId="STYLE10729"/> </genes> </database> </species> <species name="Eutrema salsugineum" NCBITaxId="72664" taxonId="541"> <database name="Eutrema salsugineum from Ensembl Plants 53" version="Ensembl Plants 53; Eutsalg1_0; GCA_000478725.1"> <genes> <gene id="24278880" protId="EUTSA00194"/> </genes> </database> </species> <species name="Brassica oleracea var. oleracea" NCBITaxId="109376" taxonId="547"> <database name="Brassica oleracea from ENSEMBL plants v23" version="Ensembl Plants 23; v2.1; 8-OCT-2014"> <genes> <gene id="24149647" protId="BRAOL02447"/> <gene id="24200849" protId="BRAOL53649"/> </genes> </database> </species> <species name="Citrus clementina" NCBITaxId="85681" taxonId="532"> <database name="Citrus clementina from Ensembl Plants 50" version="Ensembl Plants 50; Citrus_clementina_v1.0"> <genes> <gene id="24600393" protId="CITCL07323"/> </genes> </database> </species> <species name="Eragrostis tef" NCBITaxId="110835" taxonId="470"> <database name="Eragrostis tef from tef-research" version="v1"> <genes> <gene id="22116254" protId="ERATE10800"/> <gene id="22111912" protId="ERATE06458"/> </genes> </database> </species> <species name="Welwitschia mirabilis" NCBITaxId="3377" taxonId="443"> <database name="Welwitschia mirabilis from CNGB" version="CNGB; W.mirabilis.final.new; 2021-06-18"> <genes> <gene id="20873715" protId="WELMI05056"/> </genes> </database> </species> <species name="Picea glauca" NCBITaxId="3330" taxonId="446"> <database name="Pinus glauca from Plaza" version="Plaza; SMarTForests"> <genes> <gene id="20898230" protId="PICGL02581"/> </genes> </database> </species> <species name="Solanum lycopersicum" NCBITaxId="4081" taxonId="523"> <database name="Solanum lycopersicum from Ensembl Plants 49" version="Ensembl Plants 49; SL3.0; GCA_000188115.3"> <genes> <gene id="23311442" protId="SOLLC10743"/> </genes> </database> </species> <species name="Klebsormidium flaccidum" NCBITaxId="3175" taxonId="430"> <database name="Klebsormidium flaccidum" version="DF238761.1 GI:645719678"> <genes> <gene id="20628487" protId="KLEFL11065"/> </genes> </database> </species> <species name="Brassica rapa subsp. pekinensis" NCBITaxId="51351" taxonId="545"> <database name="Brassica rapa subsp. pekinensis from Ensembl Plants 36" version="Ensembl Plants 36; IVFCAASv1"> <genes> <gene id="24010082" protId="BRARP02037"/> <gene id="24047107" protId="BRARP39062"/> </genes> </database> </species> <species name="Oryza sativa subsp. indica" NCBITaxId="39946" taxonId="498"> <database name="Oryza Indica from ENSEMBL plants v21" version="Ensembl Plants 21; ASM465v1; 4-DEC-2013"> <genes> <gene id="21372798" protId="ORYSI21691"/> <gene id="21372797" protId="ORYSI21690"/> </genes> </database> </species> <species name="Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709)" NCBITaxId="296587" taxonId="425"> <database name="Micromonas commoda from ENA" version="ENA; GCA_000090985.2"> <genes> <gene id="20564920" protId="MICCC08815"/> </genes> </database> </species> <species name="Phaseolus vulgaris" NCBITaxId="3885" taxonId="571"> <database name="Phaseolus vulgaris from Ensembl Plants 39" version="Ensembl Plants 39; PhaVulg1_0"> <genes> <gene id="23632757" protId="PHAVU26044"/> </genes> </database> </species> <species name="Tetracentron sinense" NCBITaxId="13715" taxonId="454"> <database name="Tetracentron sinense from Refseq" version="Refseq; ASM1514329v1; GCA_015143295.1; 02-NOV-2020; ASM1514329v1"> <genes> <gene id="22821133" protId="TETSI04082"/> </genes> </database> </species> <species name="Diphasiastrum complanatum" NCBITaxId="34168" taxonId="436"> <database name="Diphasiastrum complanatum from Refseq" version="Refseq; Diphasiastrum complanatum v3.1; GCA_029204225.1; 21-MAR-2023"> <genes> <gene id="24713619" protId="DIPCM25166"/> </genes> </database> </species> <species name="Nicotiana attenuata" NCBITaxId="49451" taxonId="519"> <database name="Nicotiana attenuata str. UT from Ensembl Plants 38" version="Ensembl Plants 38; NIATTr2"> <genes> <gene id="23186190" protId="NICAT16361"/> </genes> </database> </species> <species name="Persea americana" NCBITaxId="3435" taxonId="461"> <database name="Persea americana from Refseq" version="Refseq; ASM2985273v1; GCA_029852735.1; 21-APR-2023; ASM2985273v1"> <genes> <gene id="22546079" protId="PERAE34731"/> </genes> </database> </species> <species name="Micromonas pusilla (strain CCMP1545)" NCBITaxId="564608" taxonId="426"> <database name="Micromonas pusilla CCMP1545 genomic scaffold MICPUCscaffold_1, whole genome shotgun sequence." version="14-APR-2009 (Rel. 100, Last updated, Version 2)"> <genes> <gene id="20570353" protId="MICPC04116"/> </genes> </database> </species> <species name="Gossypium hirsutum" NCBITaxId="3635" taxonId="536"> <database name="Gossypium hirsutum from " version="NAU-NBI v1.1"> <genes> <gene id="24414439" protId="GOSHI05587"/> <gene id="24442165" protId="GOSHI33313"/> </genes> </database> </species> <species name="Magnolia sinica" NCBITaxId="86752" taxonId="464"> <database name="Magnolia sinica from Refseq" version="Refseq; MsV1; GCF_029962835.1; 19-JUL-2023; GCF_029962835.1-RS_2023_07"> <genes> <gene id="22611956" protId="MAGSI13569"/> </genes> </database> </species> <species name="Hordeum vulgare subsp. vulgare" NCBITaxId="112509" taxonId="481"> <database name="Hordeum vulgare from Ensembl Plants 38" version="Ensembl Plants 38; Hv_IBSC_PGSB_v2"> <genes> <gene id="21594141" protId="HORVV141766"/> </genes> </database> </species> <species name="Ichthyophthirius multifiliis (strain G5)" NCBITaxId="857967" taxonId="356"> <database name="Ichthyophthirius multifiliis from Ensembl Protist 41" version="Ensembl Protist 41; JCVI-IMG1-V.1; GCA_000220395.1"> <genes> <gene id="19795408" protId="ICHMG04288"/> </genes> </database> </species> <species name="Macleaya cordata" NCBITaxId="56857" taxonId="458"> <database name="Macleaya cordata from Refseq" version="Refseq; MC_HNAU_1.0; GCA_002174775.1; 07-JUN-2017"> <genes> <gene id="22756995" protId="MACCD03625"/> </genes> </database> </species> <species name="Nicotiana tabacum" NCBITaxId="4097" taxonId="520"> <database name="Nicotiana tabacum from Refseq" version="Refseq; Ntab-TN90; GCF_000715135.1; 03-MAY-2016"> <genes> <gene id="23233661" protId="TOBAC42863"/> <gene id="23242660" protId="TOBAC51862"/> </genes> </database> </species> <species name="Zostera marina" NCBITaxId="29655" taxonId="467"> <database name="Zostera marina from OrcAE" version="OrcAE"> <genes> <gene id="21113395" protId="ZOSMR12729"/> </genes> </database> </species> <species name="Kalanchoe fedtschenkoi" NCBITaxId="63787" taxonId="507"> <database name="Kalanchoe fedtschenkoi from Ensembl Plants 53" version="Ensembl Plants 53; K_fedtschenkoi_M2_v1; GCA_002312845.1"> <genes> <gene id="22947320" protId="KALFE24033"/> </genes> </database> </species> <species name="Cannabis sativa" NCBITaxId="3483" taxonId="558"> <database name="Cannabis sativa from Ensembl Plants 51" version="Ensembl Plants 51; cs10"> <genes> <gene id="23876842" protId="CANSA33822"/> </genes> </database> </species> <species name="Eucalyptus grandis" NCBITaxId="71139" taxonId="531"> <database name="Eucalyptus grandis from Ensembl Plants 50" version="Ensembl Plants 50; Egrandis1_0"> <genes> <gene id="24553312" protId="EUCGR07162"/> </genes> </database> </species> <species name="Sorghum bicolor" NCBITaxId="4558" taxonId="475"> <database name="Sorghum bicolor from Ensembl Plants 42" version="Ensembl Plants 42; Sorghum_bicolor_NCBIv3; GCA_000003195.3"> <genes> <gene id="22241146" protId="SORBI04713"/> </genes> </database> </species> <species name="Setaria viridis" NCBITaxId="4556" taxonId="472"> <database name="Setaria viridis from Ensembl Plants 53" version="Ensembl Plants 53; Setaria_viridis_v2.0; GCA_005286985.1"> <genes> <gene id="22433775" protId="SETVI20475"/> </genes> </database> </species> <species name="Gossypium arboreum" NCBITaxId="29729" taxonId="535"> <database name="Gossypium arboreum from Refseq" version="Refseq; Gossypium_arboreum_v1.0; GCF_000612285.1; 11-AUG-2016"> <genes> <gene id="24379338" protId="GOSAR12165"/> </genes> </database> </species> <species name="Paramecium tetraurelia" NCBITaxId="5888" taxonId="361"> <database name="Paramecium tetraurelia from ENSEMBL protists v31" version="Ensembl Protists 31; GCA_000165425.1; 18-FEB-2016"> <genes> <gene id="19941153" protId="PARTE36026"/> </genes> </database> </species> <species name="Gossypium raimondii" NCBITaxId="29730" taxonId="537"> <database name="Gossypium raimondii from Ensembl Plants 38" version="Ensembl Plants 38; Graimondii2_0"> <genes> <gene id="24519843" protId="GOSRA40513"/> </genes> </database> </species> <species name="Triticum aestivum" NCBITaxId="4565" taxonId="485"> <database name="Triticum aestivum from Ensembl Plants 40" version="Ensembl Plants 40; IWGSC"> <genes> <gene id="21760540" protId="WHEAT20836"/> <gene id="21849676" protId="WHEAT109972"/> <gene id="21838824" protId="WHEAT99120"/> <gene id="21844295" protId="WHEAT104591"/> </genes> </database> </species> <species name="Ricinus communis" NCBITaxId="3988" taxonId="554"> <database name="Ricinus communis from Genbank" version="Genbank; ASM1957865v1; GCF_019578655.1; 20-MAY-2022"> <genes> <gene id="23756679" protId="RICCO31983"/> </genes> </database> </species> <species name="Vitis vinifera" NCBITaxId="29760" taxonId="530"> <database name="Vitis vinifera from ENSEMBL Plants v8" version="Ensembl Plants v9; IGGP_12x; 14-APR-2011"> <genes> <gene id="24638723" protId="VITVI11096"/> </genes> </database> </species> <species name="Cynara cardunculus var. scolymus" NCBITaxId="59895" taxonId="514"> <database name="Cynara cardunculus var. scolymus from Ensembl Plants 45" version="Ensembl Plants 45; CcrdV1"> <genes> <gene id="23094459" protId="CYNCS08570"/> </genes> </database> </species> <species name="Zea mays" NCBITaxId="4577" taxonId="476"> <database name="Zea mays from Ensembl Plants 40" version="Ensembl Plants 40; AGPv4"> <genes> <gene id="22333723" protId="MAIZE55790"/> </genes> </database> </species> <species name="Pinus taeda" NCBITaxId="3352" taxonId="445"> <database name=" from Plaza" version="Plaza"> <genes> <gene id="21019532" protId="PINTA75305"/> </genes> </database> </species> <species name="Oryza longistaminata" NCBITaxId="4528" taxonId="494"> <database name="Oryza longistaminata from ENSEMBL plants v31" version="Ensembl Plants 31; O_longistaminata_v1.0; 1-APR-2016"> <genes> <gene id="21236637" protId="ORYLO23965"/> </genes> </database> </species> <species name="Medicago truncatula" NCBITaxId="3880" taxonId="566"> <database name="Medicago truncatula from ENSEMBL plants v18" version="Ensembl Plants 18; GCA_000219495.1; 8-APR-2013"> <genes> <gene id="23428249" protId="MEDTR27545"/> </genes> </database> </species> <species name="Ostreococcus tauri" NCBITaxId="70448" taxonId="422"> <database name="Ostreococcus tauri (strain OTTH0595) chromosome 1, complete sequence." version="13-JUL-2010 (Rel. 123, Last updated, Version 15)"> <genes> <gene id="20545651" protId="OSTTA04816"/> </genes> </database> </species> <species name="Beta vulgaris subsp. vulgaris" NCBITaxId="3555" taxonId="508"> <database name="Beta vulgaris subsp. vulgaris from Ensembl Plants 53" version="Ensembl Plants 53; RefBeet-1.2.2"> <genes> <gene id="22867545" protId="BETVV17755"/> </genes> </database> </species> <species name="Papaver somniferum" NCBITaxId="3469" taxonId="459"> <database name="Papaver somniferum from Ensembl Plants 50" version="Ensembl Plants 50; ASM357369v1"> <genes> <gene id="22792969" protId="PAPSO17688"/> <gene id="22812790" protId="PAPSO37509"/> </genes> </database> </species> <species name="Ichthyophthirius multifiliis" NCBITaxId="5932" taxonId="355"> <database name="Ichthyophthirius multifiliis from ENSEMBL protists v31" version="Ensembl Protists 31; JCVI-IMG1-V_1; 18-FEB-2016"> <genes> <gene id="19786847" protId="ICHMU03765"/> </genes> </database> </species> <species name="Helianthus annuus" NCBITaxId="4232" taxonId="513"> <database name="Helianthus annuus from Ensembl Plants 39" version="Ensembl Plants 39; HanXRQr1.0"> <genes> <gene id="23039133" protId="HELAN05435"/> </genes> </database> </species> <species name="Glycine max" NCBITaxId="3847" taxonId="570"> <database name="Glycine max from Ensembl Plants 44" version="Ensembl Plants 44; Glycine_max_v2.1; GCA_000004515.4"> <genes> <gene id="23598556" protId="SOYBN66833"/> <gene id="23587606" protId="SOYBN55883"/> </genes> </database> </species> <species name="Rosa chinensis" NCBITaxId="74649" taxonId="559"> <database name="Rosa chinensis from Ensembl Plants 50" version="Ensembl Plants 50; RchiOBHm-V2"> <genes> <gene id="23974778" protId="ROSCH35483"/> </genes> </database> </species> <species name="Oryza punctata" NCBITaxId="4537" taxonId="496"> <database name="Oryza punctata from ENSEMBL plants v23" version="Ensembl Plants 23; AVCL00000000; 19-JUL-2014"> <genes> <gene id="21299085" protId="ORYPU18735"/> </genes> </database> </species> <species name="Marsilea vestita" NCBITaxId="59764" taxonId="440"> <database name="Marsilea vestita from Fernbase" version="Fernbase; v3"> <genes> <gene id="20819917" protId="MARVE01635"/> </genes> </database> </species> <species name="Coffea canephora" NCBITaxId="49390" taxonId="517"> <database name="Coffea canephora str. DH200-94 from Ensembl Plants 45" version="Ensembl Plants 45; AUK_PRJEB4211_v1"> <genes> <gene id="23118208" protId="COFCA05814"/> </genes> </database> </species> <species name="Marchantia polymorpha" NCBITaxId="3197" taxonId="435"> <database name="Marchantia polymorpha from Phytozome" version=""> <genes> <gene id="20734482" protId="MARPO16085"/> </genes> </database> </species> <species name="Nymphaea colorata" NCBITaxId="210225" taxonId="453"> <database name="Nymphaea colorata from Refseq" version="Refseq; ASM883128v1; GCF_008831285.2; 15-AUG-2022; Nymphaea colorata Annotation Release 101"> <genes> <gene id="24654928" protId="NYMNZ01094"/> </genes> </database> </species> <species name="Triticum urartu" NCBITaxId="4572" taxonId="487"> <database name="Triticum urartu from ENSEMBL plants v19" version="Ensembl Plants 19; GCA_000347455.1; 26-JUN-2013"> <genes> <gene id="22104174" protId="TRIUA31355"/> </genes> </database> </species> <species name="Prunus persica" NCBITaxId="3760" taxonId="561"> <database name="Prunus persica from ENSEMBL plants v23" version="Ensembl Plants 23; GCA_000346465.1; 19-JUL-2014"> <genes> <gene id="23938879" protId="PRUPE27065"/> </genes> </database> </species> <species name="Paramecium octaurelia" NCBITaxId="43137" taxonId="359"> <database name="Paramecium octaurelia from Genbank" version="Genbank; Paramecium_octaurelia_V1; GCA_905182995.1; 18-JUN-2021"> <genes> <gene id="19826844" protId="PAROT02996"/> </genes> </database> </species> <species name="Phaseolus angularis" NCBITaxId="3914" taxonId="572"> <database name="Vigna angularis from Ensembl Plants 41" version="Ensembl Plants 41; Vigan1.1"> <genes> <gene id="23652528" protId="PHAAN15184"/> <gene id="23665992" protId="PHAAN28648"/> </genes> </database> </species> <species name="Populus trichocarpa" NCBITaxId="3694" taxonId="553"> <database name="Populus trichocarpa from Ensembl Plants 58" version="Ensembl Plants 58; Pop_tri_v4; GCA_000002775.4"> <genes> <gene id="23807572" protId="POPTR16952"/> </genes> </database> </species> <species name="Brachypodium distachyon" NCBITaxId="15368" taxonId="480"> <database name="Brachypodium distachyon from ENSEMBL plants v21" version="Ensembl Plants 21; v1.0; 6-DEC-2013"> <genes> <gene id="21450509" protId="BRADI24813"/> </genes> </database> </species> <species name="Cajanus cajan" NCBITaxId="3821" taxonId="569"> <database name="Cajanus cajan from Ensembl Plants 56" version="Ensembl Plants 56; C.cajan_V1.0; GCA_000340665.1"> <genes> <gene id="23531479" protId="CAJCA48374"/> <gene id="23507312" protId="CAJCA24207"/> </genes> </database> </species> <species name="Annona cherimola" NCBITaxId="49314" taxonId="463"> <database name="Annona cherimola from IHSM Subtropicals DB" version="IHSM Subtropicals DB; GCA_035061585.1; ASM3049083v1"> <genes> <gene id="22556503" protId="ANNCH02713"/> </genes> </database> </species> <species name="Miscanthus sinensis" NCBITaxId="62337" taxonId="474"> <database name="Miscanthus sinensis from Phytozome/JGI" version="Phytozome/JGI; Msinensis_v7_1"> <genes> <gene id="22148108" protId="MISSI01161"/> <gene id="22154694" protId="MISSI07747"/> </genes> </database> </species> <species name="Triticum turgidum subsp. durum" NCBITaxId="4567" taxonId="486"> <database name="Triticum turgidum from Ensembl Plants 53" version="Ensembl Plants 53; Svevo.v1; GCA_900231445.1"> <genes> <gene id="21932701" protId="TRITD55987"/> <gene id="21893244" protId="TRITD16530"/> </genes> </database> </species> <species name="Paramecium primaurelia" NCBITaxId="5886" taxonId="360"> <database name="Paramecium primaurelia from Genbank" version="Genbank; Paramecium_primaurelia_V1; GCA_905182975.1; 18-JUN-2021"> <genes> <gene id="19870505" protId="PARPR04046"/> </genes> </database> </species> <species name="Setaria italica" NCBITaxId="4555" taxonId="471"> <database name="Setaria italica from ENSEMBL plants v21" version="Ensembl Plants 21; JGIv2.0; 3-DEC-2013"> <genes> <gene id="22401969" protId="SETIT24293"/> </genes> </database> </species> <species name="Erythranthe guttata" NCBITaxId="4155" taxonId="518"> <database name="Erythranthe guttata from Refseq" version="Refseq; Mimgu1_0; GCF_000504015.1; 24-JUN-2015"> <genes> <gene id="23164045" protId="ERYGU26077"/> </genes> </database> </species> <species name="Oryza brachyantha" NCBITaxId="4533" taxonId="492"> <database name="Oryza brachyantha from ENSEMBL plants v21" version="Ensembl Plants 21; Oryza_brachyantha.v1.4b; 5-DEC-2013"> <genes> <gene id="21167544" protId="ORYBR17784"/> </genes> </database> </species> <species name="Oryza glaberrima" NCBITaxId="4538" taxonId="493"> <database name="Oryza glaberrima from ENSEMBL plants v21" version="Ensembl Plants 21; AGI1.1; 6-DEC-2013"> <genes> <gene id="21197925" protId="ORYGL16858"/> </genes> </database> </species> <species name="Ceratopteris richardii" NCBITaxId="49495" taxonId="439"> <database name="Ceratopteris richardii from Refseq" version="Refseq; C.richardii_v2; GCA_020310875.1; 05-NOV-2021"> <genes> <gene id="20808052" protId="CERRI64981"/> </genes> </database> </species> <species name="Ginkgo biloba" NCBITaxId="3311" taxonId="442"> <database name="Ginkgo biloba from Ginko DB" version="Ginko DB"> <genes> <gene id="20860162" protId="GINBI19339"/> </genes> </database> </species> <species name="Chenopodium quinoa" NCBITaxId="63459" taxonId="509"> <database name="Chenopodium quinoa from ChenopodiumDB" version=""> <genes> <gene id="22922780" protId="CHEQI44269"/> <gene id="22903560" protId="CHEQI25049"/> </genes> </database> </species> <species name="Aristolochia fimbriata" NCBITaxId="158543" taxonId="462"> <database name="Aristolochia fimbriata from Refseq" version="Refseq; ASM1984555v1; GCA_019845555.1; 02-SEP-2021; ASM1984555v1"> <genes> <gene id="22662241" protId="ARIFI15566"/> </genes> </database> </species> <species name="Corchorus capsularis" NCBITaxId="210143" taxonId="534"> <database name="Corchorus capsularis from Ensembl Plants 38" version="Ensembl Plants 38; CCACVL1_1.0"> <genes> <gene id="24338406" protId="COCAP00589"/> <gene id="24356179" protId="COCAP18362"/> </genes> </database> </species> <species name="Theobroma cacao" NCBITaxId="3641" taxonId="533"> <database name="Theobroma cacao from ENSEMBL plants v23" version="Ensembl Plants 23; GCA_000403535.1; 19-JUL-2014"> <genes> <gene id="24314608" protId="THECC06437"/> </genes> </database> </species> <species name="Selaginella moellendorffii" NCBITaxId="88036" taxonId="437"> <database name="Selaginella moellendorffii from ENSEMBL plants v21" version="Ensembl Plants 21; v1.0; 4-DEC-2013"> <genes> <gene id="24764326" protId="SELML06831"/> <gene id="24774866" protId="SELML17371"/> </genes> </database> </species> <species name="Brassica napus" NCBITaxId="3708" taxonId="546"> <database name="Brassica napus from Genoscope" version="Darmor-bzh; v5"> <genes> <gene id="24052479" protId="BRANA03409"/> <gene id="24093896" protId="BRANA44826"/> <gene id="24087153" protId="BRANA38083"/> </genes> </database> </species> <species name="Perkinsus marinus (strain ATCC 50983 / TXsc)" NCBITaxId="423536" taxonId="349"> <database name="Perkinsus marinus ATCC 50983 from ENSEMBL protists v31" version="Ensembl Protists 31; JCVI_PMG_1_0; 18-FEB-2016"> <genes> <gene id="20117578" protId="PERM514645"/> </genes> </database> </species> <species name="Oryza sativa subsp. japonica" NCBITaxId="39947" taxonId="499"> <database name="Oryza sativa from ENSEMBL plants v27" version="Ensembl Plants 27; IRGSP-1; 26-MAY-2015"> <genes> <gene id="21408364" protId="ORYSJ16893"/> <gene id="21411347" protId="ORYSJ19876"/> </genes> </database> </species> <species name="Capsicum annuum" NCBITaxId="4072" taxonId="522"> <database name="Capsicum annuum from Ensembl Plants 45" version="Ensembl Plants 45; ASM51225v2"> <genes> <gene id="23293620" protId="CAPAN28766"/> </genes> </database> </species> <species name="Prunus dulcis" NCBITaxId="3755" taxonId="560"> <database name="Prunus dulcis from Ensembl Plants 50" version="Ensembl Plants 50; ALMONDv2"> <genes> <gene id="23891185" protId="PRUDU11924"/> </genes> </database> </species> <species name="Amborella trichopoda" NCBITaxId="13333" taxonId="452"> <database name="Amborella trichopoda from ENSEMBL plants v23" version="Ensembl Plants 23; GCA_000471905.1; 19-JUL-2014"> <genes> <gene id="21094773" protId="AMBTC21378"/> </genes> </database> </species> <species name="Lupinus angustifolius" NCBITaxId="3871" taxonId="565"> <database name="Lupinus angustifolius from Ensembl Plants 38" version="Ensembl Plants 38; LupAngTanjil_v1.0"> <genes> <gene id="23680784" protId="LUPAN09580"/> </genes> </database> </species> <species name="Perkinsus olseni" NCBITaxId="32597" taxonId="350"> <database name="Perkinsus olseni from Genbank" version="Genbank; ASM1311586v1; GCA_013115865.1; 18-MAY-2020"> <genes> <gene id="20144968" protId="PEROL20381"/> </genes> </database> </species> <species name="Arabidopsis thaliana" NCBITaxId="3702" taxonId="543"> <database name="Arabidopsis thaliana from Ensembl Plants 38" version="Ensembl Plants 38; TAIR10"> <genes> <gene id="24265023" protId="ARATH27336"/> </genes> </database> </species> <species name="Tetrahymena thermophila (strain SB210)" NCBITaxId="312017" taxonId="354"> <database name="Tetrahymena thermophila from ENSEMBL protists v31" version="Ensembl Protists 31; JCVI-TTA1-2; 18-FEB-2016"> <genes> <gene id="19818419" protId="TETTS19243"/> </genes> </database> </species> <species name="Musa acuminata subsp. malaccensis" NCBITaxId="214687" taxonId="469"> <database name="Musa acuminata subsp. malaccensis from Ensembl Plants 53" version="Ensembl Plants 53; Musa_acuminata_v2; GCA_904845865.1"> <genes> <gene id="22485434" protId="MUSAM19675"/> </genes> </database> </species> <species name="Nelumbo nucifera" NCBITaxId="4432" taxonId="455"> <database name="Nelumbo nucifera from Refseq" version="Refseq; Chinese Lotus 1.0; GCF_000365185.1; 16-NOV-2016"> <genes> <gene id="22689416" protId="NELNU20886"/> </genes> </database> </species> <groups> <orthologGroup taxonId="1539" id="HOG:E0821377"> <property name="TaxRange" value="Eukaryota"/> <orthologGroup taxonId="415"> <property name="TaxRange" value="Alveolata"/> <orthologGroup taxonId="351"> <property name="TaxRange" value="Perkinsus"/> <geneRef id="20117578"/> <geneRef id="20144968"/> </orthologGroup> <orthologGroup taxonId="364"> <property name="TaxRange" value="Intramacronucleata"/> <geneRef id="19968294"/> <orthologGroup taxonId="363"> <property name="TaxRange" value="Oligohymenophorea"/> <orthologGroup taxonId="358"> <property name="TaxRange" value="Hymenostomatida"/> <geneRef id="19818419"/> <orthologGroup taxonId="357"> <property name="TaxRange" value="Ichthyophthirius multifiliis"/> <geneRef id="19786847"/> <geneRef id="19795408"/> </orthologGroup> </orthologGroup> <orthologGroup taxonId="362"> <property name="TaxRange" value="Paramecium"/> <geneRef id="19826844"/> <geneRef id="19870505"/> <geneRef id="19941153"/> </orthologGroup> </orthologGroup> </orthologGroup> </orthologGroup> <orthologGroup taxonId="587"> <property name="TaxRange" value="Viridiplantae"/> <paralogGroup> <geneRef id="20545651"/> <orthologGroup taxonId="427"> <property name="TaxRange" value="Micromonas"/> <geneRef id="20564920"/> <geneRef id="20570353"/> </orthologGroup> </paralogGroup> <orthologGroup taxonId="586"> <property name="TaxRange" value="Streptophyta"/> <orthologGroup taxonId="432"> <property name="TaxRange" value="Klebsormidium"/> <geneRef id="20628487"/> <geneRef id="20646757"/> </orthologGroup> <orthologGroup taxonId="584"> <property name="TaxRange" value="Embryophyta"/> <geneRef id="20696548"/> <geneRef id="20734482"/> <orthologGroup taxonId="583"> <property name="TaxRange" value="Tracheophyta"/> <orthologGroup taxonId="438"> <property name="TaxRange" value="Lycopodiopsida"/> <paralogGroup> <geneRef id="24764326"/> <geneRef id="24774866"/> </paralogGroup> <geneRef id="24713619"/> </orthologGroup> <orthologGroup taxonId="582"> <property name="TaxRange" value="Euphyllophyta"/> <orthologGroup taxonId="441"> <property name="TaxRange" value="Polypodiidae"/> <geneRef id="20808052"/> <geneRef id="20819917"/> </orthologGroup> <orthologGroup taxonId="581"> <property name="TaxRange" value="Spermatophyta"/> <orthologGroup taxonId="451"> <property name="TaxRange" value="Acrogymnospermae"/> <geneRef id="20860162"/> <geneRef id="20873715"/> <orthologGroup taxonId="449"> <property name="TaxRange" value="Pinaceae"/> <geneRef id="21019532"/> <geneRef id="20898230"/> </orthologGroup> </orthologGroup> <orthologGroup taxonId="580"> <property name="TaxRange" value="Magnoliopsida"/> <geneRef id="21094773"/> <geneRef id="24654928"/> <orthologGroup taxonId="579"> <property name="TaxRange" value="Mesangiospermae"/> <geneRef id="22821133"/> <orthologGroup taxonId="457"> <property name="TaxRange" value="Proteales"/> <geneRef id="22689416"/> <geneRef id="22709067"/> </orthologGroup> <orthologGroup taxonId="460"> <property name="TaxRange" value="Papaveroideae"/> <paralogGroup> <geneRef id="22792969"/> <geneRef id="22812790"/> </paralogGroup> <geneRef id="22756995"/> </orthologGroup> <orthologGroup taxonId="466"> <property name="TaxRange" value="Magnoliidae"/> <geneRef id="22546079"/> <geneRef id="22662241"/> <orthologGroup taxonId="465"> <property name="TaxRange" value="Magnoliales"/> <geneRef id="22556503"/> <geneRef id="22611956"/> </orthologGroup> </orthologGroup> <orthologGroup taxonId="506"> <property name="TaxRange" value="Liliopsida"/> <geneRef id="21113395"/> <orthologGroup taxonId="504"> <property name="TaxRange" value="commelinids"/> <geneRef id="22485434"/> <orthologGroup taxonId="503"> <property name="TaxRange" value="Poaceae"/> <orthologGroup taxonId="479"> <property name="TaxRange" value="PACMAD clade"/> <paralogGroup> <geneRef id="22111912"/> <geneRef id="22116254"/> </paralogGroup> <orthologGroup taxonId="478"> <property name="TaxRange" value="Panicoideae"/> <paralogGroup> <orthologGroup taxonId="477"> <property name="TaxRange" value="Andropogoneae"/> <geneRef id="22148108"/> <geneRef id="22241146"/> <geneRef id="22333723"/> </orthologGroup> <geneRef id="22154694"/> </paralogGroup> <orthologGroup taxonId="473"> <property name="TaxRange" value="Setaria"/> <geneRef id="22401969"/> <geneRef id="22433775"/> </orthologGroup> </orthologGroup> </orthologGroup> <orthologGroup taxonId="502"> <property name="TaxRange" value="BOP clade"/> <orthologGroup taxonId="491"> <property name="TaxRange" value="Pooideae"/> <paralogGroup> <orthologGroup taxonId="490"> <property name="TaxRange" value="Triticeae"/> <paralogGroup> <orthologGroup taxonId="488"> <property name="TaxRange" value="Triticum"/> <geneRef id="21844295"/> <geneRef id="21893244"/> </orthologGroup> <orthologGroup taxonId="489"> <property name="TaxRange" value="Triticinae"/> <paralogGroup> <geneRef id="21849676"/> <orthologGroup taxonId="488"> <property name="TaxRange" value="Triticum"/> <geneRef id="21838824"/> <geneRef id="21932701"/> <geneRef id="22104174"/> </orthologGroup> </paralogGroup> <geneRef id="21724158"/> </orthologGroup> </paralogGroup> <geneRef id="21594141"/> </orthologGroup> <geneRef id="21760540"/> </paralogGroup> <geneRef id="21450509"/> </orthologGroup> <orthologGroup taxonId="501"> <property name="TaxRange" value="Oryza"/> <geneRef id="21167544"/> <geneRef id="21197925"/> <geneRef id="21236637"/> <geneRef id="21299085"/> <orthologGroup taxonId="500"> <property name="TaxRange" value="Oryza sativa"/> <paralogGroup> <geneRef id="21372797"/> <geneRef id="21372798"/> </paralogGroup> <paralogGroup> <geneRef id="21408364"/> <geneRef id="21411347"/> </paralogGroup> </orthologGroup> </orthologGroup> </orthologGroup> </orthologGroup> </orthologGroup> </orthologGroup> <orthologGroup taxonId="578"> <property name="TaxRange" value="Pentapetalae"/> <geneRef id="22947320"/> <orthologGroup taxonId="510"> <property name="TaxRange" value="Chenopodiaceae"/> <paralogGroup> <geneRef id="22922780"/> <geneRef id="22903560"/> </paralogGroup> <geneRef id="22867545"/> </orthologGroup> <orthologGroup taxonId="529"> <property name="TaxRange" value="asterids"/> <geneRef id="22973775"/> <orthologGroup taxonId="515"> <property name="TaxRange" value="Asteraceae"/> <geneRef id="23039133"/> <geneRef id="23094459"/> </orthologGroup> <orthologGroup taxonId="528"> <property name="TaxRange" value="lamiids"/> <geneRef id="23118208"/> <geneRef id="23164045"/> <orthologGroup taxonId="527"> <property name="TaxRange" value="Solanaceae"/> <paralogGroup> <geneRef id="23233661"/> <orthologGroup taxonId="521"> <property name="TaxRange" value="Nicotiana"/> <geneRef id="23186190"/> <geneRef id="23242660"/> </orthologGroup> </paralogGroup> <orthologGroup taxonId="526"> <property name="TaxRange" value="Solanoideae"/> <geneRef id="23293620"/> <geneRef id="23311442"/> </orthologGroup> </orthologGroup> </orthologGroup> </orthologGroup> <orthologGroup taxonId="577"> <property name="TaxRange" value="rosids"/> <geneRef id="24638723"/> <orthologGroup taxonId="550"> <property name="TaxRange" value="malvids"/> <paralogGroup> <orthologGroup taxonId="539"> <property name="TaxRange" value="Malvaceae"/> <paralogGroup> <orthologGroup taxonId="538"> <property name="TaxRange" value="Gossypium"/> <geneRef id="24442165"/> <geneRef id="24519843"/> </orthologGroup> <orthologGroup taxonId="538"> <property name="TaxRange" value="Gossypium"/> <geneRef id="24379338"/> <geneRef id="24414439"/> </orthologGroup> </paralogGroup> <geneRef id="24314608"/> <geneRef id="24356179"/> </orthologGroup> <geneRef id="24338406"/> </paralogGroup> <geneRef id="24553312"/> <geneRef id="24600393"/> <orthologGroup taxonId="549"> <property name="TaxRange" value="Brassicaceae"/> <paralogGroup> <orthologGroup taxonId="548"> <property name="TaxRange" value="Brassica"/> <geneRef id="24047107"/> <geneRef id="24087153"/> <geneRef id="24200849"/> </orthologGroup> <orthologGroup taxonId="548"> <property name="TaxRange" value="Brassica"/> <paralogGroup> <geneRef id="24093896"/> <geneRef id="24052479"/> </paralogGroup> <geneRef id="24010082"/> <geneRef id="24149647"/> </orthologGroup> </paralogGroup> <geneRef id="24006862"/> <geneRef id="24278880"/> <geneRef id="24265023"/> </orthologGroup> </orthologGroup> <orthologGroup taxonId="576"> <property name="TaxRange" value="fabids"/> <geneRef id="23398102"/> <orthologGroup taxonId="557"> <property name="TaxRange" value="Malpighiales"/> <geneRef id="23807572"/> <geneRef id="23756679"/> </orthologGroup> <orthologGroup taxonId="564"> <property name="TaxRange" value="Rosales"/> <geneRef id="23876842"/> <orthologGroup taxonId="563"> <property name="TaxRange" value="Rosaceae"/> <geneRef id="23974778"/> <orthologGroup taxonId="562"> <property name="TaxRange" value="Prunus"/> <geneRef id="23891185"/> <geneRef id="23938879"/> </orthologGroup> </orthologGroup> </orthologGroup> <orthologGroup taxonId="575"> <property name="TaxRange" value="50 kb inversion clade"/> <geneRef id="23680784"/> <orthologGroup taxonId="574"> <property name="TaxRange" value="NPAAA clade"/> <orthologGroup taxonId="568"> <property name="TaxRange" value="Hologalegina"/> <geneRef id="23428249"/> <geneRef id="23472728"/> </orthologGroup> <orthologGroup taxonId="573"> <property name="TaxRange" value="Phaseoleae"/> <paralogGroup> <geneRef id="23531479"/> <geneRef id="23507312"/> </paralogGroup> <paralogGroup> <geneRef id="23587606"/> <geneRef id="23598556"/> </paralogGroup> <paralogGroup> <geneRef id="23652528"/> <geneRef id="23665992"/> </paralogGroup> <geneRef id="23632757"/> </orthologGroup> </orthologGroup> </orthologGroup> </orthologGroup> </orthologGroup> </orthologGroup> </orthologGroup> </orthologGroup> </orthologGroup> </orthologGroup> </orthologGroup> </orthologGroup> </orthologGroup> </orthologGroup> </orthologGroup> </groups> </orthoXML>