Related genomes of genome ZINIC based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

ZINIC - Zinderia insecticola (strain CARI)

Proteome version: 20-JAN-2011 (Rel. 107, Last updated, Version 5) with 206 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	BURGB	Burkholderia glumae (strain BGR1)	103
2	PARXL	Paraburkholderia xenovorans (strain LB400)	101
3	DELAS	Delftia acidovorans (strain DSM 14801 / SPH-1)	101
4	BURL3	Burkholderia lata (strain ATCC 17760 / DSM 23089 / LMG 22485 / NCIMB 9086 / R18194 / 383)	101
5	DELSC	Delftia sp. (strain Cs1-4)	101
6	CUPTR	Cupriavidus taiwanensis (strain DSM 17343 / BCRC 17206 / CCUG 44338 / CIP 107171 / LMG 19424 / R1)	101
7	PARPJ	Paraburkholderia phytofirmans (strain DSM 17436 / LMG 22146 / PsJN)	101
8	BURVG	Burkholderia vietnamiensis (strain G4 / LMG 22486)	100
9	ACCPU	Accumulibacter phosphatis (strain UW-1)	100
10	CUPNN	Cupriavidus necator (strain ATCC 43291 / DSM 13513 / CCUG 52238 / LMG 8453 / N-1)	100

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYVY	Trypanosoma vivax (strain Y486)	0
2	ENTBH	Enterocytozoon bieneusi (strain H348)	3
3	RALSL	Ralstonia solanacearum	3
4	VITCO	Vittaforma corneae (strain ATCC 50505)	3
5	NEMP3	Nematocida parisii (strain ERTm3)	4
6	NANGC	Nannochloropsis gaditana (strain CCMP526)	4
7	EDHAE	Edhazardia aedis (strain USNM 41457)	4
8	SPRLO	Spraguea lophii (strain 42_110)	4
9	TRAHO	Trachipleistophora hominis	4
10	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	5