Related genomes of genome WUCBA based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

WUCBA - Wuchereria bancrofti

Proteome version: WormbaseParasite; W_bancrofti_Jakarta_0011_upd; GCA_900622535.1 with 13058 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	BRUMA	Brugia malayi	5266
2	ONCVO	Onchocerca volvulus	5175
3	LOALO	Loa loa	5111
4	THECL	Thelazia callipaeda	4069
5	TOXCA	Toxocara canis	2973
6	HAECO	Haemonchus contortus	2972
7	CAEEL	Caenorhabditis elegans	2870
8	CAERE	Caenorhabditis remanei	2799
9	CAEBR	Caenorhabditis briggsae	2661
10	CAEBE	Caenorhabditis brenneri	2515

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	8
2	UC116	Patescibacteria group bacterium E44_bin74	16
3	UC105	Patescibacteria group bacterium Baikal-deep-G193	18
4	UC087	Candidatus Pacebacteria bacterium LF-bin-483	19
5	TRYVY	Trypanosoma vivax (strain Y486)	21
6	ZINIC	Zinderia insecticola (strain CARI)	21
7	UC180	Berkelbacteria bacterium GW2011_GWE1_39_12 none	22
8	UC008	Patescibacteria group bacterium Modern_marine.mb.211	22
9	MYCHA	Mycoplasma haemolamae (strain Purdue)	22
10	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	23