Related genomes of genome VERA1 based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

VERA1 - Verticillium alfalfae (strain VaMs.102 / ATCC MYA-4576 / FGSC 10136)

Proteome version: Ensembl Fungi 51; ASM15082v1 with 10237 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	VERDV	Verticillium dahliae (strain VdLs.17 / ATCC MYA-4575 / FGSC 10137)	6199
2	VERDA	Verticillium dahliae	6191
3	NECHA	Nectria haematococca	4700
4	FUSV7	Fusarium vanettenii (strain ATCC MYA-4622 / CBS 123669 / FGSC 9596 / NRRL 45880 / 77-13-4)	4699
5	COLGR	Colletotrichum graminicola	4656
6	COLSU	Colletotrichum sublineola	4477
7	FUSC1	Fusarium oxysporum f. sp. cubense (strain race 1)	4406
8	FUSPO	Fusarium poae	4355
9	COLGC	Colletotrichum gloeosporioides (strain Cg-14)	4349
10	PESFW	Pestalotiopsis fici (strain W106-1 / CGMCC3.15140)	4320

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	UC116	Patescibacteria group bacterium E44_bin74	23
2	TRYVY	Trypanosoma vivax (strain Y486)	26
3	ZINIC	Zinderia insecticola (strain CARI)	30
4	MYCHA	Mycoplasma haemolamae (strain Purdue)	33
5	RALSL	Ralstonia solanacearum	34
6	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	35
7	UC148	bacterium (Candidatus Torokbacteria) CG_4_10_14_0_2_um_filter_35_8	36
8	UC179	candidate division Kazan bacterium GW2011_GWA1_50_15 none	36
9	UC105	Patescibacteria group bacterium Baikal-deep-G193	38
10	UC077	Candidatus Microgenomates bacterium NC_groundwater_396_Ag_B-0.1um_42_16	39