Related genomes of genome TRICA based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

TRICA - Tribolium castaneum

Proteome version: Ensembl Metazoa 53; Tcas5.2; GCA_000002335.3 with 18534 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	AEDAL	Aedes albopictus	5286
2	HELAM	Helicoverpa armigera	5184
3	PAPMA	Papilio machaon	5140
4	BOMIM	Bombus impatiens	4996
5	LINHU	Linepithema humile	4947
6	VANTA	Vanessa tameamea	4944
7	APIME	Apis mellifera	4750
8	DENPD	Dendroctonus ponderosae	4739
9	CIMLE	Cimex lectularius	4717
10	DROME	Drosophila melanogaster	4688

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	18
2	TRYVY	Trypanosoma vivax (strain Y486)	32
3	UC116	Patescibacteria group bacterium E44_bin74	34
4	ZINIC	Zinderia insecticola (strain CARI)	39
5	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	39
6	UC105	Patescibacteria group bacterium Baikal-deep-G193	40
7	UC087	Candidatus Pacebacteria bacterium LF-bin-483	41
8	MYCHA	Mycoplasma haemolamae (strain Purdue)	41
9	MYCSL	Mycoplasma suis (strain Illinois)	43
10	MYCS3	Mycoplasma suis (strain KI_3806)	43