Related genomes of genome THET2 based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

THET2 - Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27)

Proteome version: 01-SEP-2009 (Rel. 110, Last updated, Version 104) with 2201 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	THET8	Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)	1857
2	THETG	Thermus thermophilus (strain SG0.5JP17-16)	1783
3	MEIRD	Meiothermus ruber (strain ATCC 35948 / DSM 1279 / VKM B-1258 / 21)	1238
4	MARHT	Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1)	1235
5	MEISD	Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2)	1234
6	OCEP5	Oceanithermus profundus (strain DSM 14977 / NBRC 100410 / VKM B-2274 / 506)	1141
7	DEIDV	Deinococcus deserti (strain DSM 17065 / CIP 109153 / LMG 22923 / VCD115)	979
8	DEIPD	Deinococcus peraridilitoris (strain DSM 19664 / LMG 22246 / CIP 109416 / KR-200)	970
9	DEIGD	Deinococcus geothermalis (strain DSM 11300 / AG-3a)	964
10	DEIML	Deinococcus maricopensis (strain DSM 21211 / LMG 22137 / NRRL B-23946 / LB-34)	919

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYCI	Trypanosoma congolense (strain IL3000)	17
2	ENTBH	Enterocytozoon bieneusi (strain H348)	19
3	VITCO	Vittaforma corneae (strain ATCC 50505)	19
4	EDHAE	Edhazardia aedis (strain USNM 41457)	24
5	TRAHO	Trachipleistophora hominis	25
6	NEMP3	Nematocida parisii (strain ERTm3)	27
7	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	28
8	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	31
9	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	31
10	NOSCE	Nosema ceranae (strain BRL01)	31