Related genomes of genome SYNFM based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

SYNFM - Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB)

Proteome version: 14-NOV-2006 (Rel. 89, Last updated, Version 2) with 4010 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	DESAA	Desulfatibacillum alkenivorans (strain AK-01)	1256
2	DESAL	Desulfatibacillum aliphaticivorans	1251
3	U19DE	Deltaproteobacteria bacterium NC_groundwater_1540_Pr4_S-0.65um_55_10	1251
4	DESTA	Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1)	1199
5	DESAH	Desulforapulum autotrophicum (strain ATCC 43914 / DSM 3382 / VKM B-1955 / HRM2)	1142
6	DESTT	Desulfobacula toluolica (strain DSM 7467 / Tol2)	1065
7	DESB2	Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / LMG 7858 / VKM B-1802 / 2st14)	1052
8	DESAR	Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2)	1039
9	SOLM1	Solidesulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1)	1026
10	GEOS8	Geobacter sp. (strain M18)	1020

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYVY	Trypanosoma vivax (strain Y486)	3
2	ENTBH	Enterocytozoon bieneusi (strain H348)	13
3	TRYCI	Trypanosoma congolense (strain IL3000)	17
4	EDHAE	Edhazardia aedis (strain USNM 41457)	18
5	VITCO	Vittaforma corneae (strain ATCC 50505)	18
6	NEMP3	Nematocida parisii (strain ERTm3)	23
7	TRAHO	Trachipleistophora hominis	24
8	NOSCE	Nosema ceranae (strain BRL01)	24
9	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	26
10	SPRLO	Spraguea lophii (strain 42_110)	28