Related genomes of genome SCHPO based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

SCHPO - Schizosaccharomyces pombe (strain 972 / ATCC 24843)

Proteome version: Ensembl Fungi 22; ASM294v2; 17-MAR-2014 with 5087 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	SCHCR	Schizosaccharomyces cryophilus (strain OY26 / ATCC MYA-4695 / CBS 11777 / NBRC 106824 / NRRL Y48691)	3981
2	SCHOY	Schizosaccharomyces octosporus (strain yFS286)	3980
3	SCHJY	Schizosaccharomyces japonicus (strain yFS275 / FY16936)	3300
4	MUCC1	Mucor circinelloides f. circinelloides (strain 1006PhL)	1984
5	AURPU	Aureobasidium pullulans	1969
6	AURSE	Aureobasidium subglaciale (strain EXF-2481)	1969
7	COLGR	Colletotrichum graminicola	1938
8	PENRF	Penicillium roqueforti (strain FM164)	1918
9	NEOFI	Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181)	1916
10	EMEND	Emericella nidulans	1915

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	13
2	TRYVY	Trypanosoma vivax (strain Y486)	25
3	UC116	Patescibacteria group bacterium E44_bin74	27
4	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	32
5	MYCHA	Mycoplasma haemolamae (strain Purdue)	34
6	UC087	Candidatus Pacebacteria bacterium LF-bin-483	35
7	ZINIC	Zinderia insecticola (strain CARI)	37
8	UC179	candidate division Kazan bacterium GW2011_GWA1_50_15 none	38
9	UC077	Candidatus Microgenomates bacterium NC_groundwater_396_Ag_B-0.1um_42_16	39
10	MYCS3	Mycoplasma suis (strain KI_3806)	41