Related genomes of genome RUMCH based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

RUMCH - Ruminiclostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10)

Proteome version: 15-JAN-2009 (Rel. 99, Last updated, Version 1) with 3286 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ACECE	Acetivibrio clariflavus (strain DSM 19732 / NBRC 101661 / EBR45)	1326
2	ACET2	Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372)	1221
3	ACET1	Acetivibrio thermocellus (strain DSM 1313 / LMG 6656 / LQ8)	1212
4	CLOC7	Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 / 743B)	1106
5	CLOB8	Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052)	1063
6	CLOAE	Clostridium acetobutylicum (strain EA 2018)	1056
7	HYDET	Hydrogenispora ethanolica	1055
8	CLOAB	Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)	1051
9	DESHY	Desulfitobacterium hafniense (strain Y51)	1038
10	CELLD	Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5)	1017

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYVY	Trypanosoma vivax (strain Y486)	3
2	TRYCI	Trypanosoma congolense (strain IL3000)	17
3	EDHAE	Edhazardia aedis (strain USNM 41457)	19
4	ENTBH	Enterocytozoon bieneusi (strain H348)	20
5	VITCO	Vittaforma corneae (strain ATCC 50505)	21
6	TRAHO	Trachipleistophora hominis	24
7	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	25
8	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	26
9	NEMP3	Nematocida parisii (strain ERTm3)	27
10	EIMMA	Eimeria maxima	30