Related genomes of genome RUEST based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

RUEST - Ruegeria sp. (strain TM1040)

Proteome version: 15-MAY-2014 (Rel. 120, Last updated, Version 11) with 3847 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	PHAIB	Phaeobacter inhibens (strain DSM 17395)	2415
2	RUEPO	Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3)	2280
3	ROSLO	Roseobacter litoralis (strain ATCC 49566 / DSM 6996 / JCM 21268 / NBRC 15278 / OCh 149)	2048
4	ROSDO	Roseobacter denitrificans (strain ATCC 33942 / OCh 114)	1989
5	JANSC	Jannaschia sp. (strain CCS1)	1927
6	DINSH	Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12)	1873
7	OCEGH	Oceanicola granulosus (strain ATCC BAA-861 / DSM 15982 / KCTC 12143 / HTCC2516)	1753
8	PARDP	Paracoccus denitrificans (strain Pd 1222)	1739
9	CERS4	Cereibacter sphaeroides (strain ATCC 17023 / DSM 158 / JCM 6121 / CCUG 31486 / LMG 2827 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.)	1726
10	RHOSU	Rhodovulum sulfidophilum	1726

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	14
2	TRAHO	Trachipleistophora hominis	18
3	EDHAE	Edhazardia aedis (strain USNM 41457)	19
4	VITCO	Vittaforma corneae (strain ATCC 50505)	20
5	NOSCE	Nosema ceranae (strain BRL01)	24
6	NEMP3	Nematocida parisii (strain ERTm3)	24
7	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	27
8	VAVCU	Vavraia culicis (isolate floridensis)	28
9	NOSB1	Nosema bombycis (strain CQ1 / CVCC 102059)	29
10	SPRLO	Spraguea lophii (strain 42_110)	29