Related genomes of genome ROMCU based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

ROMCU - Romanomermis culicivorax

Proteome version: WormbaseParasite; nRc.2.0; GCA_001039655.1 with 48376 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	SALTR	Salmo trutta	1807
2	SALSA	Salmo salar	1761
3	SINGR	Sinocyclocheilus grahami	1703
4	CAPI1	Capitella sp. 1	1476
5	CAPTE	Capitella teleta	1475
6	CAEEL	Caenorhabditis elegans	1454
7	CAERE	Caenorhabditis remanei	1446
8	DANRE	Danio rerio	1403
9	XENLA	Xenopus laevis	1398
10	HAECO	Haemonchus contortus	1395

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	9
2	UC087	Candidatus Pacebacteria bacterium LF-bin-483	15
3	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	16
4	TRYVY	Trypanosoma vivax (strain Y486)	16
5	UC116	Patescibacteria group bacterium E44_bin74	18
6	UC179	candidate division Kazan bacterium GW2011_GWA1_50_15 none	19
7	MYCHA	Mycoplasma haemolamae (strain Purdue)	19
8	PHYMT	Phytoplasma mali (strain AT)	20
9	MYCHI	Mycoplasma haemofelis (strain Ohio2)	20
10	MYCHN	Mycoplasma haemocanis (strain Illinois)	20