Related genomes of genome PUCT1 based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

PUCT1 - Puccinia triticina (isolate 1-1 / race 1 (BBBD))

Proteome version: Ensembl Fungi 48; ASM15152v1 with 11638 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	PUCGR	Puccinia graminis	4144
2	PUCGT	Puccinia graminis f. sp. tritici (strain CRL 75-36-700-3 / race SCCL)	4143
3	COPCI	Coprinopsis cinerea	1694
4	ARMGA	Armillaria gallica	1630
5	GLOTA	Gloeophyllum trabeum (strain ATCC 11539 / FP-39264 / Madison 617)	1604
6	GLOTR	Gloeophyllum trabeum	1599
7	HYPSF	Hypholoma sublateritium (strain FD-334 SS-4)	1587
8	WOLCO	Wolfiporia cocos (strain MD-104)	1577
9	LACBI	Laccaria bicolor	1572
10	AURST	Auricularia subglabra (strain TFB-10046 / SS5)	1569

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	11
2	UC116	Patescibacteria group bacterium E44_bin74	16
3	ZINIC	Zinderia insecticola (strain CARI)	20
4	UC179	candidate division Kazan bacterium GW2011_GWA1_50_15 none	22
5	TRYVY	Trypanosoma vivax (strain Y486)	23
6	UC077	Candidatus Microgenomates bacterium NC_groundwater_396_Ag_B-0.1um_42_16	27
7	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	28
8	UC087	Candidatus Pacebacteria bacterium LF-bin-483	28
9	MYCHA	Mycoplasma haemolamae (strain Purdue)	30
10	UC184	candidate division WWE3 bacterium RAAC2_WWE3_1	31