Related genomes of genome POPTR based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

POPTR - Populus trichocarpa

Proteome version: Ensembl Plants 42; Pop_tri_v3 with 41335 genes / 64622 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	GOSHI	Gossypium hirsutum	21539
2	BRANA	Brassica napus	18675
3	SOYBN	Glycine max	18266
4	TOBAC	Nicotiana tabacum	17867
5	WHEAT	Triticum aestivum	17682
6	ACTCC	Actinidia chinensis var. chinensis	15664
7	MANES	Manihot esculenta	15641
8	GOSRA	Gossypium raimondii	14642
9	GOSAR	Gossypium arboreum	14344
10	QUELO	Quercus lobata	14141

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	42
2	UC116	Patescibacteria group bacterium E44_bin74	49
3	ZINIC	Zinderia insecticola (strain CARI)	51
4	TRYVY	Trypanosoma vivax (strain Y486)	51
5	MYCS3	Mycoplasma suis (strain KI_3806)	53
6	MYCHA	Mycoplasma haemolamae (strain Purdue)	53
7	MYCSL	Mycoplasma suis (strain Illinois)	56
8	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	58
9	UC179	candidate division Kazan bacterium GW2011_GWA1_50_15 none	62
10	UC087	Candidatus Pacebacteria bacterium LF-bin-483	63