Related genomes of genome PLABA based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

PLABA - Plasmodium berghei (strain Anka)

Proteome version: Ensembl Protists 39; PBANKA01 with 4903 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	PLAGO	Plasmodium gonderi	4041
2	PLAF7	Plasmodium falciparum (isolate 3D7)	3998
3	PLAKH	Plasmodium knowlesi (strain H)	3885
4	PLAFR	Plasmodium fragile	3834
5	PLAVS	Plasmodium vivax (strain Salvador I)	3782
6	PLAFC	Plasmodium falciparum (isolate Camp / Malaysia)	3739
7	PLAFP	Plasmodium falciparum (isolate Palo Alto / Uganda)	3487
8	PLAFO	Plasmodium falciparum (isolate NF54)	3285
9	PLACD	Plasmodium cynomolgi (strain B)	3279
10	PLAYO	Plasmodium yoelii yoelii	3260

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	6
2	TRYVY	Trypanosoma vivax (strain Y486)	19
3	UC116	Patescibacteria group bacterium E44_bin74	23
4	ZINIC	Zinderia insecticola (strain CARI)	24
5	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	28
6	UC087	Candidatus Pacebacteria bacterium LF-bin-483	31
7	MYCHA	Mycoplasma haemolamae (strain Purdue)	33
8	UC179	candidate division Kazan bacterium GW2011_GWA1_50_15 none	35
9	UC105	Patescibacteria group bacterium Baikal-deep-G193	35
10	UC184	candidate division WWE3 bacterium RAAC2_WWE3_1	35