Related genomes of genome PHYPN based on shared OMA groups

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

PHYPN - Phytophthora parasitica (strain INRA-310)

Proteome version: Ensembl Protists 39; PP_INRA-310_V2 with 23121 genes / 27942 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	PHYPR	Phytophthora parasitica	15292
2	PHYNI	Phytophthora nicotianae	11210
3	PHYSP	Phytophthora sojae (strain P6497)	10487
4	PHYIT	Phytophthora infestans (strain T30-4)	9618
5	PHYRM	Phytophthora ramorum	8461
6	GLOUD	Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144)	7120
7	PLAHL	Plasmopara halstedii	7025
8	SAPDV	Saprolegnia diclina (strain VS20)	6310
9	SAPPC	Saprolegnia parasitica (strain CBS 223.65)	6069
10	HYAAE	Hyaloperonospora arabidopsidis (strain Emoy2)	5129

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	34
2	UC116	Patescibacteria group bacterium E44_bin74	37
3	ZINIC	Zinderia insecticola (strain CARI)	42
4	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	43
5	MYCHA	Mycoplasma haemolamae (strain Purdue)	43
6	TRYVY	Trypanosoma vivax (strain Y486)	47
7	MYCS3	Mycoplasma suis (strain KI_3806)	50
8	MYCSL	Mycoplasma suis (strain Illinois)	51
9	UC087	Candidatus Pacebacteria bacterium LF-bin-483	51
10	UC105	Patescibacteria group bacterium Baikal-deep-G193	51