Related genomes of genome PHYMF based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

PHYMF - Phycisphaera mikurensis (strain NBRC 102666 / KCTC 22515 / FYK2301M01)

Proteome version: 29-MAR-2012 (Rel. 112, Last updated, Version 1) with 3268 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RUBBR	Rubinisphaera brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448)	693
2	SINAD	Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)	686
3	RHOBA	Rhodopirellula baltica (strain DSM 10527 / NCIMB 13988 / SH1)	682
4	U06PL	Planctomycetes bacterium H5_PLA8	661
5	PIRSD	Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128)	633
6	PEDPL	Pedosphaera parvula (strain Ellin514)	614
7	SOLUE	Solibacter usitatus (strain Ellin6076)	597
8	PLAL2	Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 / Mu 290)	597
9	OPITP	Opitutus terrae (strain DSM 11246 / JCM 15787 / PB90-1)	586
10	ISOPI	Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B)	582

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYCI	Trypanosoma congolense (strain IL3000)	15
2	ENTBH	Enterocytozoon bieneusi (strain H348)	15
3	VITCO	Vittaforma corneae (strain ATCC 50505)	16
4	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	18
5	EDHAE	Edhazardia aedis (strain USNM 41457)	22
6	MEGSC	Megaselia scalaris	23
7	NEMP3	Nematocida parisii (strain ERTm3)	23
8	TRAHO	Trachipleistophora hominis	24
9	NANEQ	Nanoarchaeum equitans (strain Kin4-M)	24
10	NOSB1	Nosema bombycis (strain CQ1 / CVCC 102059)	25