Related genomes of genome ORYLA based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

ORYLA - Oryzias latipes

Proteome version: Ensembl 70; MEDAKA1; 11-DEC-2012 with 19577 genes / 20499 proteins.

‹

Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	SALTR	Salmo trutta	13029
2	POEFO	Poecilia formosa	12876
3	ORYME	Oryzias melastigma	12616
4	ORENI	Oreochromis niloticus	12576
5	ASTCA	Astatotilapia calliptera	12539
6	SERDU	Seriola dumerili	12535
7	ANATE	Anabas testudineus	12491
8	XIPMA	Xiphophorus maculatus	12444
9	OREAU	Oreochromis aureus	12434
10	AMPPE	Amphiprion percula	12420

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	24
2	TRYVY	Trypanosoma vivax (strain Y486)	37
3	UC116	Patescibacteria group bacterium E44_bin74	38
4	ZINIC	Zinderia insecticola (strain CARI)	39
5	MYCHA	Mycoplasma haemolamae (strain Purdue)	42
6	UC087	Candidatus Pacebacteria bacterium LF-bin-483	42
7	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	46
8	MYCS3	Mycoplasma suis (strain KI_3806)	48
9	UC105	Patescibacteria group bacterium Baikal-deep-G193	49
10	MYCSL	Mycoplasma suis (strain Illinois)	51