Related genomes of genome NITEU based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

NITEU - Nitrosomonas europaea (strain ATCC 19718 / CIP 103999 / KCTC 2705 / NBRC 14298)

Proteome version: 02-MAR-2010 (Rel. 118, Last updated, Version 118) with 2472 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	NITEC	Nitrosomonas eutropha (strain DSM 101675 / C91 / Nm57)	1566
2	NITSI	Nitrosomonas sp. (strain Is79A3)	1312
3	NITMU	Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849 / C 71)	1256
4	THASP	Thauera sp. (strain MZ1T)	1054
5	ACCPU	Accumulibacter phosphatis (strain UW-1)	1050
6	DECAR	Dechloromonas aromatica (strain RCB)	1036
7	AROAE	Aromatoleum aromaticum (strain EbN1)	1024
8	AZOSB	Azoarcus sp. (strain BH72)	1019
9	NITHN	Nitrosococcus halophilus (strain Nc4)	1011
10	CUPNN	Cupriavidus necator (strain ATCC 43291 / DSM 13513 / CCUG 52238 / LMG 8453 / N-1)	1004

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	VITCO	Vittaforma corneae (strain ATCC 50505)	17
2	ENTBH	Enterocytozoon bieneusi (strain H348)	18
3	EDHAE	Edhazardia aedis (strain USNM 41457)	21
4	TRAHO	Trachipleistophora hominis	23
5	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	24
6	NOSCE	Nosema ceranae (strain BRL01)	25
7	NEMP3	Nematocida parisii (strain ERTm3)	26
8	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	27
9	TRYCI	Trypanosoma congolense (strain IL3000)	27
10	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	27