Related genomes of genome MYCTF based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

MYCTF - Mycobacterium tuberculosis (strain F11)

Proteome version: 22-DEC-2006 (Rel. 90, Last updated, Version 2) with 3855 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	MYCTK	Mycobacterium tuberculosis (strain KZN 1435 / MDR)	3734
2	MYCTA	Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra)	3727
3	MYCTU	Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)	3707
4	MYCA0	Mycobacterium africanum (strain GM041182)	3652
5	MYCBT	Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019)	3599
6	MYCBO	Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)	3595
7	MYCBP	Mycobacterium bovis (strain BCG / Pasteur 1173P2)	3582
8	MYCCP	Mycobacterium canettii (strain CIPT 140010059)	3558
9	MYCTD	Mycobacterium tuberculosis (strain CCDC5180)	3329
10	MYCTC	Mycobacterium tuberculosis (strain CCDC5079)	3234

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYVY	Trypanosoma vivax (strain Y486)	5
2	VITCO	Vittaforma corneae (strain ATCC 50505)	19
3	ENTBH	Enterocytozoon bieneusi (strain H348)	20
4	TRYCI	Trypanosoma congolense (strain IL3000)	26
5	EDHAE	Edhazardia aedis (strain USNM 41457)	27
6	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	27
7	TRAHO	Trachipleistophora hominis	28
8	SPRLO	Spraguea lophii (strain 42_110)	29
9	NEMP3	Nematocida parisii (strain ERTm3)	30
10	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	31