Related genomes of genome MICCC based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

MICCC - Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709)

Proteome version: ENA; GCA_000090985.2 with 10106 genes / 10132 proteins.

‹

Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	MICPC	Micromonas pusilla (strain CCMP1545)	4721
2	OSTLU	Ostreococcus lucimarinus (strain CCE9901)	2930
3	WHEAT	Triticum aestivum	2675
4	BRANA	Brassica napus	2387
5	GOSHI	Gossypium hirsutum	2206
6	SELML	Selaginella moellendorffii	2153
7	OSTTA	Ostreococcus tauri	2151
8	TOBAC	Nicotiana tabacum	2106
9	MISSI	Miscanthus sinensis	2031
10	SOYBN	Glycine max	2026

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYVY	Trypanosoma vivax (strain Y486)	21
2	RALSL	Ralstonia solanacearum	23
3	UC116	Patescibacteria group bacterium E44_bin74	41
4	MYCHA	Mycoplasma haemolamae (strain Purdue)	47
5	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	47
6	ZINIC	Zinderia insecticola (strain CARI)	47
7	UC087	Candidatus Pacebacteria bacterium LF-bin-483	51
8	MYCS3	Mycoplasma suis (strain KI_3806)	53
9	UC127	Candidatus Micrarchaeota archaeon B47_G15	53
10	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	54