Related genomes of genome LEUCK based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

LEUCK - Leuconostoc citreum (strain KM20)

Proteome version: 01-JUL-2008 (Rel. 93, Last updated, Version 3) with 1812 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	LEUGG	Leuconostoc gelidum subsp. gasicomitatum (strain DSM 15947 / CCUG 46042 / CECT 5767 / JCM 12535 / LMG 18811 / NBRC 113245 / TB1-10)	1254
2	LEUMM	Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / DSM 20343 / BCRC 11652 / CCM 1803 / JCM 6124 / NCDO 523 / NBRC 100496 / NCIMB 8023 / NCTC 12954 / NRRL B-1118 / 37Y)	1241
3	LEUGJ	Leuconostoc gelidum (strain JB7)	1228
4	LEUS2	Leuconostoc sp. (strain C2)	1224
5	LEUCJ	Leuconostoc carnosum (strain JB16)	1209
6	LACPL	Lactiplantibacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1)	979
7	LACPS	Lactiplantibacillus plantarum (strain ST-III)	972
8	LACPJ	Lactiplantibacillus plantarum (strain JDM1)	966
9	LACCD	Lacticaseibacillus casei (strain BD-II)	865
10	LENBN	Lentilactobacillus buchneri (strain NRRL B-30929)	861

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	12
2	VITCO	Vittaforma corneae (strain ATCC 50505)	14
3	NEMP3	Nematocida parisii (strain ERTm3)	17
4	EDHAE	Edhazardia aedis (strain USNM 41457)	17
5	TRAHO	Trachipleistophora hominis	18
6	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	20
7	RALSL	Ralstonia solanacearum	21
8	SPRLO	Spraguea lophii (strain 42_110)	21
9	TRYCI	Trypanosoma congolense (strain IL3000)	21
10	VAVCU	Vavraia culicis (isolate floridensis)	22