Related genomes of genome LEPIC based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

LEPIC - Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130)

Proteome version: 02-MAR-2010 (Rel. 118, Last updated, Version 112) with 3647 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	LEPIN	Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601)	3286
2	LEPII	Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain IPAV)	3233
3	LEPBL	Leptospira borgpetersenii serovar Hardjo-bovis (strain L550)	2343
4	LEPBJ	Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197)	2321
5	LEPBA	Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames)	1789
6	LEPBP	Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris)	1788
7	TURPD	Turneriella parva (strain ATCC BAA-1111 / DSM 21527 / NCTC 11395 / H)	933
8	U04SP	Spirochaetes bacterium Go_SlDig_bin_244	789
9	MYXSD	Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8)	760
10	MYXXD	Myxococcus xanthus (strain DK1622)	750

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYVY	Trypanosoma vivax (strain Y486)	7
2	ENTBH	Enterocytozoon bieneusi (strain H348)	15
3	TRAHO	Trachipleistophora hominis	19
4	NEMP3	Nematocida parisii (strain ERTm3)	20
5	EDHAE	Edhazardia aedis (strain USNM 41457)	22
6	VITCO	Vittaforma corneae (strain ATCC 50505)	22
7	VAVCU	Vavraia culicis (isolate floridensis)	23
8	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	24
9	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	25
10	TRYCI	Trypanosoma congolense (strain IL3000)	27