Related genomes of genome LEPBP based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

LEPBP - Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris)

Proteome version: 01-JUL-2008 (Rel. 93, Last updated, Version 2) with 3723 proteins.

‹

Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	LEPBA	Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames)	3543
2	LEPII	Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain IPAV)	1819
3	LEPIN	Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601)	1805
4	LEPIC	Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130)	1788
5	LEPBL	Leptospira borgpetersenii serovar Hardjo-bovis (strain L550)	1711
6	LEPBJ	Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197)	1702
7	TURPD	Turneriella parva (strain ATCC BAA-1111 / DSM 21527 / NCTC 11395 / H)	1045
8	U04SP	Spirochaetes bacterium Go_SlDig_bin_244	850
9	MYXXD	Myxococcus xanthus (strain DK1622)	777
10	PSEAE	Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)	772

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	18
2	VITCO	Vittaforma corneae (strain ATCC 50505)	19
3	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	22
4	EDHAE	Edhazardia aedis (strain USNM 41457)	23
5	NANST	Nanobsidianus stetteri	24
6	TRAHO	Trachipleistophora hominis	24
7	NANEQ	Nanoarchaeum equitans (strain Kin4-M)	26
8	TRYCI	Trypanosoma congolense (strain IL3000)	26
9	NEMP3	Nematocida parisii (strain ERTm3)	26
10	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	28